PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0180800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 499aa    MW: 52202 Da    PI: 6.1971
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0180800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS280.93.6e-861174892373
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        + lL+ecA a+s g+l+ a+ +L +ls++asp++ +  +Rl+ayf++A+aa l++s+ ++++ l+p + ++   +   aa++++++v P+ +
  ORGLA05G0180800.1 117 IALLMECAAAMSVGNLAGANGALLELSQMASPYApSCGERLVAYFARAMAALLVGSWVGVAAPLAPPPPPR--AAAINAAFRALYNVAPFAR 206
                        689*******************************8889************************998888874..67777899*********** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                        +++l++NqaIlea++g++ vHi+D+d+  G  lQW++Ll aLa+Rp+gpp +R+Tg+g     s+  l+ tg++La +A++l ++fef +++
  ORGLA05G0180800.1 207 LAYLACNQAILEAFHGKRLVHIVDLDVVPGgaLQWLSLLPALAARPGGPPVIRVTGFGM----SASVLHDTGNQLAGLARKLCMSFEFYAVA 294
                        ***************************988447**************************....9**************************87 PP

               GRAS 183 akrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse......sFlerflealeyysal 267
                         +  ++  + ++  ++ gEa+aV++    h ++d  ++        ++lv+ l+P  v++veqe  h++       +Fl+rf++al++ysa+
  ORGLA05G0180800.1 295 KRPGDADAVADMPGRRpGEAVAVHWLR--HAMYDAAGDDGA----AMRLVRWLEPAAVTLVEQERAHGADaggghgRFLDRFVSALHHYSAV 380
                        77777778888855555********99..778755555555....9******************888655567777**************** PP

               GRAS 268 fdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.sg 356
                        fd++ a+ p  +   r+  E+ +lgrei nv+a  g +r   +e+ ++Wre l + GF  ++ +      a+l+   ++ + gy+v  + +g
  ORGLA05G0180800.1 381 FDAMGASRPDGEdASRHLAEHGVLGREIANVLAVGGPARSSGRERPGSWREVLARHGFVHAAGGGGGGGRAQLVAGACPgGLGYTVAGDhDG 472
                        ****99988877689999*************************************************************99******66166 PP

               GRAS 357 slvlgWkdrpLvsvSaW 373
                        ++ lgWk+ pL++vSaW
  ORGLA05G0180800.1 473 TVRLGWKGTPLYAVSAW 489
                        666************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.4790468IPR005202Transcription factor GRAS
PfamPF035141.3E-83117489IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MQDSLGLMQF HDHHQYLYSS SSSNLPLQQP LLSHHHRFLE ANEGCVGEDD SPEFVEPAAA  60
AAVAGTFEQR PELGACKEVY SEEGGAAEER TGMAIAGADV EQVAAEDEEE AHGVRMIALL  120
MECAAAMSVG NLAGANGALL ELSQMASPYA PSCGERLVAY FARAMAALLV GSWVGVAAPL  180
APPPPPRAAA INAAFRALYN VAPFARLAYL ACNQAILEAF HGKRLVHIVD LDVVPGGALQ  240
WLSLLPALAA RPGGPPVIRV TGFGMSASVL HDTGNQLAGL ARKLCMSFEF YAVAKRPGDA  300
DAVADMPGRR PGEAVAVHWL RHAMYDAAGD DGAAMRLVRW LEPAAVTLVE QERAHGADAG  360
GGHGRFLDRF VSALHHYSAV FDAMGASRPD GEDASRHLAE HGVLGREIAN VLAVGGPARS  420
SGRERPGSWR EVLARHGFVH AAGGGGGGGR AQLVAGACPG GLGYTVAGDH DGTVRLGWKG  480
TPLYAVSAWA WCSPPHARA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-91974901379Protein SCARECROW
5b3h_A6e-911014904378Protein SCARECROW
5b3h_D6e-911014904378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0180800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0939520.0AC093952.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1004_E02, complete sequence.
GenBankAC1182890.0AC118289.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0099O15, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638651.10.0protein SCARECROW
TrEMBLI1PWR00.0I1PWR0_ORYGL; Uncharacterized protein
STRINGORGLA05G0180800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138132528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.12e-56GRAS family protein