PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0124000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 552aa    MW: 56312 Da    PI: 5.3202
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0124000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2315.3e-7112850734374
               GRAS  34 dgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDfdis.qGl 123
                        +g++ qRla+ f+eALa r    +++++++l+ +++++     + aa++ f  ++P+++++  +aN  I e +e e   vH++D++ +    
  ORGLA05G0124000.1 128 EGRSAQRLASAFAEALALRFILPCDGVCRSLHLTRAPP--PPAVSAARQGFRAMCPFVRLAAAAANLSIAEVMEAErAVVHVVDLGGGvDAN 217
                        5889***************************8888875..6677789999**************************5556*****9763699 PP

               GRAS 124 QWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.......eleeLrvkpgEalaVnlv 207
                        QW+ L +  a+Rp+gpp  lR+T+v++    s++ l++ +   a  A++l+++++f+++  +++e+l         ++L v pg  laV   
  ORGLA05G0124000.1 218 QWVELVRLVAARPGGPPgLLRLTVVNE----SEDFLSAAAAYVAAEAQRLDLSLQFHPV-LSSIEELsatatgsIGSRLVVIPGQPLAVVAN 304
                        *************999989********....9**************************5.66666662222222235678888********* PP

               GRAS 208 lqlhrll........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eak 274
                        lq+hrll                          +++++ + d++L+++++l+Pk+vv++e+eadhn +++ +r+ +al+yy+alfd+l +++
  ORGLA05G0124000.1 305 LQIHRLLafpdyvdgvasrrpaaeqsgssqhTMTTATKTKADALLRAIRDLNPKLVVLTENEADHNVAELGARVWNALNYYAALFDALeASS 396
                        ***************************99764455555589***********************************************5555 PP

               GRAS 275 lpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve......eesg 356
                         p+++   +er+ vEr +lg+ei+++v  eg+ rrerhetl++W er+ +aGF+pv+     a++  l  ++v+ + g  v       +  g
  ORGLA05G0124000.1 397 TPPAAvppHERACVERWVLGEEIKDIVVREGTGRRERHETLGRWAERMVAAGFSPVTAARALASTETLAQQMVAaGGGGAVAgvlraaHGGG 488
                        66666899*************************************************99988888888888888666655554554424467 PP

               GRAS 357 slv.lgWkdrpLvsvSaWr 374
                        ++  ++W d p++svS W+
  ORGLA05G0124000.1 489 CFPvICWCDVPVFSVSTWT 507
                        7757**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.00460479IPR005202Transcription factor GRAS
PfamPF035141.8E-68128507IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MAAEIPRLAL GGGGGGAGGE RLPAAGEDSA AAATNAGKRP VVGLGFGSSL AAMAAAAAAA  60
GIQPDAFALG GPAEYPAGDG ERDVLMVSFL RSIAAFLADG TCQMQVNDGL SCVVDLAGGD  120
ADGGGVGEGR SAQRLASAFA EALALRFILP CDGVCRSLHL TRAPPPPAVS AARQGFRAMC  180
PFVRLAAAAA NLSIAEVMEA ERAVVHVVDL GGGVDANQWV ELVRLVAARP GGPPGLLRLT  240
VVNESEDFLS AAAAYVAAEA QRLDLSLQFH PVLSSIEELS ATATGSIGSR LVVIPGQPLA  300
VVANLQIHRL LAFPDYVDGV ASRRPAAEQS GSSQHTMTTA TKTKADALLR AIRDLNPKLV  360
VLTENEADHN VAELGARVWN ALNYYAALFD ALEASSTPPA AVPPHERACV ERWVLGEEIK  420
DIVVREGTGR RERHETLGRW AERMVAAGFS PVTAARALAS TETLAQQMVA AGGGGAVAGV  480
LRAAHGGGCF PVICWCDVPV FSVSTWTARR VLVPAPPLWP PAAAGGAGPS GSGYGGDGPS  540
TASSSAAMWW VG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-2712950952380Protein SCARECROW
5b3h_D2e-2712950952380Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0124000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209870.0AC120987.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0007A06, complete sequence.
GenBankAC1362180.0AC136218.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0039A21, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881539.10.0scarecrow-like protein 3
TrEMBLI1PV420.0I1PV42_ORYGL; Uncharacterized protein
STRINGORGLA05G0124000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170631012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-34scarecrow-like 3