PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0096900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 283aa    MW: 30512.5 Da    PI: 6.3731
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0096900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.86.4e-14106148955
                AP2   9 dkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        ++ +gr+ AeIrdp     +  kr +lg+f+taeeAa+ ++ a+++++g
  ORGLA05G0096900.1 106 RP-WGRFSAEIRDP-----SlqKRLWLGTFDTAEEAAAVYDDAALRIKG 148
                        45.**********9.....445************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.86176156IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-16105157IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-23105157IPR001471AP2/ERF domain
SMARTSM003803.0E-23105162IPR001471AP2/ERF domain
PfamPF008474.5E-6106148IPR001471AP2/ERF domain
CDDcd000184.11E-23106156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MRPPAMSPAD SLAAGRSRRV GASMPRPKRV RVYFVDADAT DTDSSGDERS RPRVREVIDI  60
DVGAASPAPA PAPKHPRRLV PTATAALXXX XXXXXXXXXX XXXXXRPWGR FSAEIRDPSL  120
QKRLWLGTFD TAEEAAAVYD DAALRIKGSH AVTNFPSDSD TPSAKANQMK LHPRRHTTPD  180
KTPSSSTAAA AKASVPDPTP APPEEDRAND SSFNPFASPT SVLRYAAADE VTAPSFEHLL  240
VELGDLSAPP PSTKAAEFDW LPWWEGEDFV TAGLTASNAV SVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-151061561263ATERF1
3gcc_A1e-151061561263ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0096900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241410.0AC124141.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0065C11, complete sequence.
GenBankAK1106130.0AK110613.1 Oryza sativa Japonica Group cDNA clone:002-168-H06, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637513.11e-167ethylene-responsive transcription factor 3
TrEMBLI1PUC10.0I1PUC1_ORYGL; Uncharacterized protein
STRINGORGLA05G0096900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131402226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.16e-13ERF domain protein 10