PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0058200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 412aa    MW: 44232.8 Da    PI: 9.9993
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0058200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11236280554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h   Er+RR+++N++f  Lr++lP+a     +K +Ka++L +A +Y++ L
  ORGLA05G0058200.1 236 HVLSERKRREKLNDSFKALRDVLPPA-----TKKDKASVLMRAKDYVNVL 280
                        7789*********************9.....9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-16229300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.434231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.17E-10233285No hitNo description
Gene3DG3DSA:4.10.280.101.2E-14235298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-9236280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDGGSWMLKA AAAGDMHGGA GDTMIRCSWS DMATTDQLLR HHEQEPAMTM MMNSQSQAMQ  60
QQLSQIYMLM DMEEHDHQYA TPPSPSSSSF RSFSAGTTTT TTSRDDNSSL MLAAAAASCH  120
HQTMEVSSQI LLPRPGQAAR RSSGGHGAAA AATAFRPYSR YLGPKKHLLR RPGAATTATG  180
GGGGQRAFKK AISVLSKIHA ARLAQYYQIM EMAARASPAA TAGGGGGENQ QLQLQHVLSE  240
RKRREKLNDS FKALRDVLPP ATKKDKASVL MRAKDYVNVL KARIAELEEK NRKLSESQQL  300
HAGDGDGERD DGPDDDKIEV NTSRSAADQG SSPNKCQELH LKIVLGSSSG CSAMDAVAGI  360
LQGLNEKRDV SLLATGHNSS SSSSSGRRRL LPRAKSSQQP AVRLQTLCKL SR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239244ERKRRE
2240245RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0058200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076750.0AK107675.1 Oryza sativa Japonica Group cDNA clone:002-132-A01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638951.10.0transcription factor PIF1
TrEMBLI1PT840.0I1PT84_ORYGL; Uncharacterized protein
STRINGORGLA05G0058200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-17bHLH family protein