PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0052500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 938aa    MW: 104109 Da    PI: 6.1367
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0052500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.13.9e-05700760154
                        TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 
                        rrkRt +++ q++e e++   ++ +  +a+  +  ++kl     ++t +q k+W  Nr+ak
  ORGLA05G0052500.1 700 RRKRTIMNDRQINEIEKALIDEPEMhkNAALLQAWSEKLsgqgsEITSSQLKNWLNNRKAK 760
                        89*****************986666115566899999999999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-5682761IPR009057Homeodomain-like
PROSITE profilePS5007110.122697764IPR001356Homeobox domain
CDDcd000860.00428700763No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0060195Biological Processnegative regulation of antisense RNA transcription
GO:0005730Cellular Componentnucleolus
GO:0003697Molecular Functionsingle-stranded DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 938 aa     Download sequence    Send to blast
MVSVIEELSG LTSRELGEML KESENFVLQE KTEDGGTKQV DMEKLVSSLP LHLLAVCLEL  60
ERGSDLAYVL RGMRFLHSLS ELAARHTRLE QVLLDDVKLS EQVMDLIFFV LSILSHWKKE  120
NHLGVSPFIH SSLVAASLHL LTSYFSSQWH ELVHILLAHP KVDIFMDVAF DSLHDDVRSL  180
SHRLSTLSTN TFPVGPFDSR LTHFICQQCE ASLQFLLLLC QQKLFRDRIL KNKELSRNGG  240
ILSLSRSILK LGVPECLKGS IDIAASMSRL KAKILSILLQ LCEAETVSYL DEVATSPKSM  300
QLGQTLALEV LDLLKTAFGR KQKLTLDSHD KSYPMGSVLI SALRLVDVFS DDSNFRSSFI  360
TNTIPFLTQI LAIPHDEFVS NWCSVNLPVI EEDANLDYDP FGAAELALAA AGNKLTEAKA  420
NYSCPFRPIS MPSIAYAQTR TSCVVKIIAN LHVFVPNICE EQERDLFLQK FQKYLVSGNP  480
RSSVDHPASA DLKATTVCRN LGSLSEYARS LIPNNLLNEE DVQLLSEFAY KLQTWCKSHV  540
GQSTSQAVKI DPSSESKEDF KPLQHPLIPS TVVPDSSINN LPKNMEEPTP TNMEEPAPTP  600
STKQEGNARD ETPRSTVALN GGFLQNSVGQ DLVHLGVART SSGFLGGGTS TSTGSLRCKM  660
DLDPASSSMD HFKTPDRKES GLQDDEKGDT HMYDERQPKR RKRTIMNDRQ INEIEKALID  720
EPEMHKNAAL LQAWSEKLSG QGSEITSSQL KNWLNNRKAK LARIAKERGV LSEGENADKP  780
STPATPHHCD SSESAGEESY LPPARVMSAL GISKGSRFVS PDGNETTSQA EFNQNIMLSR  840
PFTRSFSFEP GRLVSLIDND GKEVGRGKIF QVEGRLQGKA LTDTRVCIVD VIELKIEKWR  900
ELPHPSEASG RTFQEAESRN GGVMRVAWDV IRLSPVVQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0052500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115270.0AK111527.1 Oryza sativa Japonica Group cDNA clone:J013021F13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640317.10.0nodulin homeobox isoform X1
RefseqXP_015640318.10.0nodulin homeobox isoform X1
RefseqXP_015640319.10.0nodulin homeobox isoform X1
TrEMBLI1PT270.0I1PT27_ORYGL; Uncharacterized protein
STRINGORGLA05G0052500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51261418