PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0050000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 199aa    MW: 21801.1 Da    PI: 5.7461
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0050000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.6e-30100158159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDg++WrKYG+K vk+s++pr+YYrC+++gC+vkk+ver++ed ++v++tY g Hnh 
  ORGLA05G0050000.1 100 LDDGFKWRKYGKKAVKNSPNPRNYYRCSTEGCNVKKRVERDREDHRYVITTYDGVHNHA 158
                        59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-3288160IPR003657WRKY domain
SuperFamilySSF1182901.83E-2792160IPR003657WRKY domain
PROSITE profilePS5081131.42295160IPR003657WRKY domain
SMARTSM007742.5E-34100159IPR003657WRKY domain
PfamPF031063.0E-23101157IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAASVGLNPE AFFFSNSYSY SSSPFMASYT PELSAAAIDA DLFSGELDFD CSLPAPTFAG  60
AGQEYPENEN TMMRYESEEK MRARVNGRIG FRTRSEVEIL DDGFKWRKYG KKAVKNSPNP  120
RNYYRCSTEG CNVKKRVERD REDHRYVITT YDGVHNHASP AAAAAALQYA AAAGDYYSPP  180
LSSAGSPPAA YSAGGSLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2686161378Probable WRKY transcription factor 4
2lex_A1e-2686161378Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0050000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8328020.0CT832802.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN033C24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638018.11e-112probable WRKY transcription factor 50
TrEMBLA0A0D3G3Z61e-144A0A0D3G3Z6_9ORYZ; Uncharacterized protein
TrEMBLI1PT021e-144I1PT02_ORYGL; Uncharacterized protein
STRINGORGLA05G0050000.11e-145(Oryza glaberrima)
STRINGOBART05G05560.11e-145(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-39WRKY DNA-binding protein 50