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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
ORGLA05G0025000.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
bHLH |
| Protein Properties |
Length: 534aa MW: 56321.1 Da PI: 6.4724 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA05G0025000.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 40.9 | 3.6e-13 | 375 | 415 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+rRRdriN+++ L+el+P++ K +Ka++Le+A+eY+k Lq
ORGLA05G0025000.1 375 QRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 415
79******************8.....6******************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 534 aa
Download sequence Send
to blast |
MLRGNDTGSD LAELLWDNGA PAPLRPPPPP PFQPFTCSAA ATTSPPAHDY LFIKNLMRGG 60
GAANHHHHDD DDDDDDDVPW LHYHPVVDDD DDADADTAPL PPDYCAALLS GLSDHLPPPA 120
AAASRVDPDP CSSSHGAVVP STSAAAAKQA RTSGGGGGGV MNFTFFSRPL QQRPSGGETA 180
SASASAAATS TVPVESTVVQ AATNRLRSTP LFSDQRMAWL HPPKPSPRAA APPPPPPLAP 240
TTRHRLDTAA ATATVAQRLP PSEARAPDAP PPAATATATT SSVCSGNGDR RQLNWRDSHN 300
NQSAEWSASQ DELDLDDELA GVHRRSAARS SKRSRTAEVH NLSERVSTHT MHHPQHPRRV 360
MTSSHLAIEL LSSSQRRRDR INEKMRALQE LIPNCNKIDK ASMLEEAIEY LKTLQLQVQM 420
MSMGTGMFVP PMMLPAAAAA MQHHHMQMQQ MAGPMAAAAH FPHLGAAAAM GLAGFGMPAA 480
AQFPCPMFPA APPMSMFAPP PPPPFPHAAA TAVEQTPSPP GAADAGDAPA VKQA
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Atypical bHLH transcription factor that acts as negative regulator of grain size. Binds the transcription factor ILI6 and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB667900 | 0.0 | AB667900.1 Oryza sativa Japonica Group APG mRNA for basic helix-loop-helix protein APG, complete cds. |
| GenBank | AK287958 | 0.0 | AK287958.1 Oryza sativa Japonica Group cDNA, clone: J075053F01, full insert sequence. |
