 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
ORGLA05G0022200.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
MYB |
| Protein Properties |
Length: 317aa MW: 34426.5 Da PI: 5.5556 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA05G0022200.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 61.2 | 2.2e-19 | 29 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT eEd llvd+++ +G g+W++ ar+ g++Rt+k+c++rw++yl
ORGLA05G0022200.1 29 RGPWTVEEDMLLVDYIANHGEGRWNSLARCAGLRRTGKSCRLRWLNYL 76
89********************************************97 PP
|
| 2 | Myb_DNA-binding | 51 | 3.3e-16 | 82 | 125 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
ORGLA05G0022200.1 82 RGNITADEQLLILDLHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 125
7999******************.*********.***********96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 317 aa
Download sequence Send
to blast |
MEMMGMAMSP AMSSATAAAA SEDEGDLRRG PWTVEEDMLL VDYIANHGEG RWNSLARCAG 60
LRRTGKSCRL RWLNYLRPDV RRGNITADEQ LLILDLHSRW GNRWSKIAQY LPGRTDNEIK 120
NYWRTRVQKH AKQLRCDVNS KEFRDVVRHV WMPRLVERIQ ADAAAAGEVA APAPVSAAAT 180
RSMSSPAGAM YLHHQQIPLA AGAMVVAPAA SSEAYHHHGG GDTSCSEPSQ AAVTMSPDDA 240
SSTLRSSAAA AAAEDEVIHG DVLSGSWSEL LATTTTTIAA TGGRDGAATA GLPDFDELGD 300
FEDNLWSLED IWLHQQC
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC118288 | 0.0 | AC118288.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0077L08, complete sequence. |
| GenBank | AK243659 | 0.0 | AK243659.1 Oryza sativa Japonica Group cDNA, clone: J100089B08, full insert sequence. |
| GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
