PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0015400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 515aa    MW: 55802.5 Da    PI: 7.2371
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0015400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.6e-17173222155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  ORGLA05G0015400.1 173 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 222
                        78*******************......55************************997 PP
2AP241.14.5e-13265315155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  ORGLA05G0015400.1 265 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 315
                        89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-16173231IPR016177DNA-binding domain
PfamPF008476.0E-9173222IPR001471AP2/ERF domain
SMARTSM003802.4E-32174236IPR001471AP2/ERF domain
CDDcd000184.29E-11174232No hitNo description
Gene3DG3DSA:3.30.730.103.7E-17174231IPR001471AP2/ERF domain
PROSITE profilePS5103217.596174230IPR001471AP2/ERF domain
CDDcd000187.78E-25265325No hitNo description
SuperFamilySSF541718.5E-17265324IPR016177DNA-binding domain
PfamPF008471.4E-8265315IPR001471AP2/ERF domain
SMARTSM003801.8E-32266329IPR001471AP2/ERF domain
PROSITE profilePS5103215.527266323IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-15266323IPR001471AP2/ERF domain
PRINTSPR003675.8E-6267278IPR001471AP2/ERF domain
PRINTSPR003675.8E-6305325IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MELDLNNVAE GVVEKHETAA RSDSGTSESS VLNGEASGAA AAPAEEGSSS TLPPPPAAVL  60
EFSILRSSAS ASGENDADDD EEEEATPSPP PHHQHQQLLV TRELFPSAAP SPRPAPQHWA  120
ELGFLRPDPP RPHPDIRILA HAPPPAPPPP PPPPQPQPQA AKKSRRGPRS RSSQYRGVTF  180
YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVEADINFN LSDYEEDMRQ  240
MKSLSKEEFV HVLRRQSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDSEV  300
EAARAYDKAA IKCNGREAVT NFEPSTYDGE LPTDAAAQGA DVDLNLSISQ PAASQLSPKR  360
DSGSLGLQIH HGSFEGSEFK RAKNDAAPSE LASHPHRFPL LTEHPPIWTA QPHPLFSNNE  420
DASRSSDQKR KPSEGVAVPS WAWKQVSHHH PAPPHTLPLP FFSSSSSSPS SSSAAASSGF  480
SKAATTAAAA QHTATLRFNP TAPSSSSSSR HHHHH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0015400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851170.0AY685117.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D23-like (AP2D23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639329.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotB8AXC30.0AP21_ORYSI; APETALA2-like protein 1
TrEMBLI1PS060.0I1PS06_ORYGL; Uncharacterized protein
STRINGORGLA05G0015400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100832935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.38e-97related to AP2.7