|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
ORGLA04G0277700.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
Family |
Trihelix |
Protein Properties |
Length: 298aa MW: 32128.8 Da PI: 8.0911 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ORGLA04G0277700.1 | genome | AGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 76.2 | 5e-24 | 23 | 94 | 1 | 71 |
trihelix 1 rWtkqevlaLiearremeerlrrgklk.kplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71
rWt++e+l+L++arr me+r rr+ + +W++vs+++r++g+er+p qC+++w nl+++ kki ++ek+
ORGLA04G0277700.1 23 RWTRHETLVLLQARRAMEHRGRRSPQPvRLKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEKNL 94
8**********************97764889**************************************985 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 298 aa
Download sequence Send
to blast |
XXXXXXXXXX XXXXXXXRSR LPRWTRHETL VLLQARRAME HRGRRSPQPV RLKWAAVSAY 60 CRRHGVERGP MQCRKRWGNL SWDLKKIVAW EKNLAAVVSG AGDNAVAAGE GEGEAPPPPR 120 LESFWDMRGE QRRARQLPSS FDREVYDALV GGHGAAPPSD FGEDLADGDG VDADELPPPP 180 LMVMPISATV SAKRGGAASD KNSTSQHDGG GGGGLKDSEA TYGAGVGGEE GTTTATATAT 240 TTSIGRQVIE ALERGNRMLG DQLEAQRAAW DAEREQRVAL LAAVDKLAGA VCRIADKL
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |