PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 449aa MW: 46483 Da PI: 10.3196

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA04G0258700.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39	1.9e-12	276	320	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky ORGLA04G0258700.1 276 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 320 6***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	7.851	159	217	IPR017884	SANT domain
SMART	SM00717	2.6E-5	160	215	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.48E-9	163	219	IPR009057	Homeodomain-like
CDD	cd00167	1.71E-5	164	213	No hit	No description
PROSITE profile	PS51294	16.605	269	325	IPR017930	Myb domain
SuperFamily	SSF46689	3.81E-16	271	326	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.9E-17	273	323	IPR006447	Myb domain, plants
SMART	SM00717	9.3E-11	273	323	IPR001005	SANT/Myb domain
CDD	cd00167	8.12E-10	276	321	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-10	276	319	IPR009057	Homeodomain-like
Pfam	PF00249	6.0E-11	276	320	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
VRVCIRCLSP SSPRRKPGPT RHRAPPSQPA SQPLSRXNKI SPASPRLASP RGNIHHTPPP 60 PRPPLRGRSP PPPPPPSPAL PLSLLGGNPN LFLPRKPAAF LKRIKSPSLI RRRNPSPQNL 120 AAPRAVLGFE LMAVEEASSS SGGGRGGGGG GGGEEGLSGC GGGWTREQEK AFENALATVG 180 DDEEEGDGLW EKLAEAVEGK TADEVRRHYE LLVEDVDGIE AGRVPLLVYA GDGGVEEGSA 240 GGGKKGGGGG GGGGGGGHGE KGSAKSAEQE RRKGIAWTED EHRLFLLGLE KYGKGDWRSI 300 SRNFVISRTP TQVASHAQKY FIRLNSMNRE RRRSSIHDIT SVNNGDTSAA QGPITGQPNG 360 PSANPGKSSK QSPQPANAPP GVDAYGTTIG QPVGGPLVSA VGTPVTLPVP AAPHIAYGMH 420 APVPGAVVPG APVNMPPMPY PMPPPTSHG

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

VRVCIRCLSP SSPRRKPGPT RHRAPPSQPA SQPLSRXNKI SPASPRLASP RGNIHHTPPP  60
PRPPLRGRSP PPPPPPSPAL PLSLLGGNPN LFLPRKPAAF LKRIKSPSLI RRRNPSPQNL  120
AAPRAVLGFE LMAVEEASSS SGGGRGGGGG GGGEEGLSGC GGGWTREQEK AFENALATVG  180
DDEEEGDGLW EKLAEAVEGK TADEVRRHYE LLVEDVDGIE AGRVPLLVYA GDGGVEEGSA  240
GGGKKGGGGG GGGGGGGHGE KGSAKSAEQE RRKGIAWTED EHRLFLLGLE KYGKGDWRSI  300
SRNFVISRTP TQVASHAQKY FIRLNSMNRE RRRSSIHDIT SVNNGDTSAA QGPITGQPNG  360
PSANPGKSSK QSPQPANAPP GVDAYGTTIG QPVGGPLVSA VGTPVTLPVP AAPHIAYGMH  420
APVPGAVVPG APVNMPPMPY PMPPPTSHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-12	159	234	6	78	RADIALIS
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	241	249	GGKKGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA04G0258700.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068623	0.0	AK068623.1 Oryza sativa Japonica Group cDNA clone:J013153N23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636999.1	0.0	transcription factor SRM1
Swissprot	Q9FNN6	7e-98	SRM1_ARATH; Transcription factor SRM1
TrEMBL	I1PQW8	0.0	I1PQW8_ORYGL; Uncharacterized protein
STRING	ORGLA04G0258700.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6376	38	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	3e-77	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]