PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA04G0231200.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 782aa MW: 85156.3 Da PI: 5.9345

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA04G0231200.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.3	1.7e-20	105	161	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ ORGLA04G0231200.1 105 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 161 688999************************************************995 PP
2	START	204.3	4.9e-64	295	520	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE.........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT CS START 1 elaeeaaqelvkkalaeepgWvkss.........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdet 75 ela +a++elv++a+++ep+W+ + e + ++e+ + f+++ + ++ea+r+s+vv+m++a+lve+l+d ++ +++ ORGLA04G0231200.1 295 ELAVAAMEELVRMAQLDEPLWSVAPpldaaaaamETLSEEEYARMFPRGLGpkqygLRSEASRDSAVVIMTHANLVEILMDANQyaaVFSNI 386 57899*******************99999999999999999999887779*****************************666666666 PP -SEEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS START 76 lakaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160 + +a tlev+s+g galq+m+ e+q++splvp R+++fvRy++q +g+w++vdvS+ds ++ p v +++++pSg+li++++ng ORGLA04G0231200.1 387 VSRAVTLEVLSTGvagnynGALQVMSVEFQVPSPLVPtRESYFVRYCKQNADGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNG 474 66*************************************************************98....7************** PP EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +skvtwvehv++++r++h++++ lv+sgla+ga++wv tl+rqce+ ORGLA04G0231200.1 475 YSKVTWVEHVEVDDRSVHNIYKLLVNSGLAFGARRWVGTLDRQCER 520 ******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-21	91	160	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.0E-19	93	162	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.07	102	162	IPR001356	Homeobox domain
SMART	SM00389	2.3E-20	103	166	IPR001356	Homeobox domain
CDD	cd00086	1.34E-19	104	163	No hit	No description
Pfam	PF00046	6.4E-18	105	160	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	137	160	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	41.731	286	523	IPR002913	START domain
SuperFamily	SSF55961	4.95E-35	288	522	No hit	No description
CDD	cd08875	7.11E-120	290	519	No hit	No description
SMART	SM00234	9.5E-59	295	520	IPR002913	START domain
Pfam	PF01852	4.4E-54	296	520	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	4.7E-6	360	516	IPR023393	START-like domain
SuperFamily	SSF55961	2.2E-23	541	772	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence Send to blast
MMIPARHMPS MIGRNGAAYG SSSALSLSQP NLLDNHQFQQ AFQHQQQQHH LLDQIPATTA 60 ESGDNMIRSR ASDPLGGDEF ESKSGSENVD RVSVDDQDPN QRPRKKRYHR HTQHQIQEME 120 AFFKECPHPD DKQRKELSRE LGLEPLQVKF WFQNKRTQMK NQHERHENSQ LRSDNEKLRA 180 ENMRYKEALS SASCPNCGGP AALGEMSFDE HHLRIENARL REEIDRISAI AAKYVGKPMV 240 PFPVLSNPMA AAASRAPLDL PVAPYGVPGD MFGGGGAGEL LRGVQSEVDK PMIVELAVAA 300 MEELVRMAQL DEPLWSVAPP LDAAAAAMET LSEEEYARMF PRGLGPKQYG LRSEASRDSA 360 VVIMTHANLV EILMDANQYA AVFSNIVSRA VTLEVLSTGV AGNYNGALQV MSVEFQVPSP 420 LVPTRESYFV RYCKQNADGT WAVVDVSLDS LRPSPVLKCR RRPSGCLIQE MPNGYSKVTW 480 VEHVEVDDRS VHNIYKLLVN SGLAFGARRW VGTLDRQCER LASVMASNIP TSDIGVITSS 540 EGRKSMLKLA ERMVVSFCGG VTASVAHQWT TLSGSGAEDV RVMTRKSVDD PGRPPGIVLN 600 AATSFWLPVP PKRVFDFLRD ESSRSEWDIL SNGGIVQEMA HIANGRDQGN CVSLLRVNSS 660 NSNQSNMLIL QESCTDASGS YVIYAPVDVV AMNVVLNGGD PDYVALLPSG FAILPDGPAH 720 EGGDGGVGVG SGGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIACTVER IKAAVSGESN 780 PQ

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence Send to blast

MMIPARHMPS MIGRNGAAYG SSSALSLSQP NLLDNHQFQQ AFQHQQQQHH LLDQIPATTA  60
ESGDNMIRSR ASDPLGGDEF ESKSGSENVD RVSVDDQDPN QRPRKKRYHR HTQHQIQEME  120
AFFKECPHPD DKQRKELSRE LGLEPLQVKF WFQNKRTQMK NQHERHENSQ LRSDNEKLRA  180
ENMRYKEALS SASCPNCGGP AALGEMSFDE HHLRIENARL REEIDRISAI AAKYVGKPMV  240
PFPVLSNPMA AAASRAPLDL PVAPYGVPGD MFGGGGAGEL LRGVQSEVDK PMIVELAVAA  300
MEELVRMAQL DEPLWSVAPP LDAAAAAMET LSEEEYARMF PRGLGPKQYG LRSEASRDSA  360
VVIMTHANLV EILMDANQYA AVFSNIVSRA VTLEVLSTGV AGNYNGALQV MSVEFQVPSP  420
LVPTRESYFV RYCKQNADGT WAVVDVSLDS LRPSPVLKCR RRPSGCLIQE MPNGYSKVTW  480
VEHVEVDDRS VHNIYKLLVN SGLAFGARRW VGTLDRQCER LASVMASNIP TSDIGVITSS  540
EGRKSMLKLA ERMVVSFCGG VTASVAHQWT TLSGSGAEDV RVMTRKSVDD PGRPPGIVLN  600
AATSFWLPVP PKRVFDFLRD ESSRSEWDIL SNGGIVQEMA HIANGRDQGN CVSLLRVNSS  660
NSNQSNMLIL QESCTDASGS YVIYAPVDVV AMNVVLNGGD PDYVALLPSG FAILPDGPAH  720
EGGDGGVGVG SGGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIACTVER IKAAVSGESN  780
PQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA04G0231200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB101645	0.0	AB101645.1 Oryza sativa Japonica Group Roc2 mRNA for GL2-type homeodomain protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636338.1	0.0	homeobox-leucine zipper protein ROC2 isoform X1
Refseq	XP_015636339.1	0.0	homeobox-leucine zipper protein ROC2 isoform X1
Swissprot	Q0J9X2	0.0	ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBL	I1PQ43	0.0	I1PQ43_ORYGL; Uncharacterized protein
STRING	ORGLA04G0231200.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP799	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	protodermal factor 2

Publications ? help Back to Top
Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]