PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0213700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 439aa    MW: 45997.5 Da    PI: 7.5731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0213700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.3e-053313681254
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        R +++ +++  L++l+ +      +K + a++L +++eYIk L
  ORGLA04G0213700.1 331 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 368
                        677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.935319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-11329382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.66E-5329372No hitNo description
Gene3DG3DSA:4.10.280.103.5E-8329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MGDHQMMHAA PAAMYNGGGG GGTTSSHGVW WSNAVGVPAA ATCSTTTELA GYTVWSSALA  60
AGYDGMVADN GGKQAKSTTT ASSESPGNNS SVTFQEPASI PDPAAVAAVP QPGLAGFTDW  120
TQPFMNNGAG LHEFLQDGHH DMSASSLMNH SSNNLALQQA GHHHELLSSF GSDLLLSPTS  180
PYGGFQSSLL RSLMEPTAKQ QQQQPALAGL QQYHQYQQQM GHTPAAAAKF AQAVGARDSL  240
QFTNDAPFWN PSAGFGMPAA VAVAAAAAQD QASVRSAKRS SPAPPRAAAT LALKTAMEGV  300
GDSSSVITKK ETAFKKPRLE TPSPLPTFKV RKEKLGDRIT ALQQLVSPFG KTDTASVLHE  360
TIEYIKFLHD QVGALSAPYL KNGAHQLPHL KNSSPDKSKH GEISLKGRGL CLVPISSTFA  420
VASEVPVELW TPFGANFIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0213700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8327010.0CT832701.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI224H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633969.10.0transcription factor bHLH112
TrEMBLI1PPL80.0I1PPL8_ORYGL; Uncharacterized protein
STRINGORGLA04G0213700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.13e-48bHLH family protein