PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0200200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 358aa    MW: 38053.4 Da    PI: 7.5004
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0200200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.5e-1393144155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ ++ Lr+l+P++   +  + + a+i+  A++++k+L+
  ORGLA04G0200200.1  93 QRMTHIAVERNRRRQMNEYLAVLRSLMPES---YVHRGDQASIVGGAIDFVKELE 144
                        79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-1891168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-1491148No hitNo description
Gene3DG3DSA:4.10.280.101.2E-1391148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.23792143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-1093144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1098149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MALDTLCSAG GDVLIYDTFN ASAAAAAAVV PPASFLFGNN NAGGAAGTET RVQVAAGAVP  60
EVDQLLKQAQ QPGRRKRRRR ARSCKSREDA ESQRMTHIAV ERNRRRQMNE YLAVLRSLMP  120
ESYVHRGDQA SIVGGAIDFV KELEQLLQSL EAQKRTLLMQ PPPPPQQQRE PKCDAADSTS  180
AADQETPAAA AADGPPFARF FTYPQYVWCH NPAQYGGGGG GAAAENRAGV ADIEVSLVET  240
HASIRVMAAR RPGQLLKMVA GLQALRLTVL HLNVTALGSL ALYSISVKRF HGGKAIASLG  300
PLGVFFLCAL YLWYSTTVVE EGCGMATVDD IAAAVHHVLC IIDAEAASQM LLAGEASG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17379RRKRRRR
27478RKRRR
37481RKRRRRAR
493104RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0200200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8552350.0CR855235.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0142I02-OSIGBa0101B20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637096.11e-178transcription factor bHLH94
TrEMBLI1PP830.0I1PP83_ORYGL; Uncharacterized protein
STRINGORGLA04G0200200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.16e-47bHLH family protein