PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0200000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 636aa    MW: 71654 Da    PI: 5.4677
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0200000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.22.8e-1132626342374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        ++lL++cA+a + +d+++ ++lL+++++++s +gd+ qRla++f++AL+arla+++s++y++l++++ts   + + l+a+kl++ ++P+ k+
  ORGLA04G0200000.1 262 TTLLIHCAQAAAIDDHRNSNELLKQIRQRSSAYGDAGQRLAHCFANALEARLAGTGSNIYRSLAAKRTS---VYDILNAFKLYVTACPFKKI 350
                        689**************************************************************9999...9******************* PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                        s++   +aIl+a +g +r+Hi+D++i++G+QWp ++q +++Rp+gpps+RiTgv+ p++g   ++ +e+tg+rL+++A+ ++vpfe+++ +a
  ORGLA04G0200000.1 351 SNFFSIEAILNASKGMTRLHIVDYGIQYGFQWPIFFQRISKRPGGPPSVRITGVDLPQPGfrPAQLIEATGRRLHDYARMFNVPFEYHA-IA 441
                        ***********************************************************9*999*************************.79 PP

               GRAS 184 krledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         +++++++e+L++++  +E l+Vn+ +++ +++de v+ +s+r +vLk++++++P+++++   +  +n++ F++rf eal yys+lfd+le+
  ORGLA04G0200000.1 442 AKWDTIRVEDLKIDKdkDELLVVNCLFRMRNMMDEMVTDDSPRMQVLKTIRKMNPNLFIHGVVNGTYNAPFFVTRFKEALFYYSSLFDMLET 533
                        9************9999*************************************************************************** PP

               GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                        +++r +e+r  +Er l+gre+ nvvaceg+er+er et+++W+ r  +aGFk++pl+++++k+a++ ++k + + + v+ee++++++gWk+r
  ORGLA04G0200000.1 534 TASRVDENRLLIERDLFGREALNVVACEGTERVERPETYKQWQVRNIRAGFKQLPLNQETVKKARYKVKKSYHRDFLVDEENKWMLQGWKGR 625
                        ************************************************************************999***************** PP

               GRAS 366 pLvsvSaWr 374
                         ++++SaW+
  ORGLA04G0200000.1 626 IIFALSAWE 634
                        ********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.547235614IPR005202Transcription factor GRAS
PfamPF035149.8E-111262634IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MLDSGSYDDV DYGDLFSIPN PPAPHLLNFP LQFFPSNGFI SSADDSHRSP AGMFGSTPSP  60
TSTTTELENS EDLSESADDA VLAYINQFLL EDEEDESCPG TITSVEDSAL LAVEKPFVDI  120
LTASQEACQE NSWIDSSCDF TGNGGLLDTF TTTHAACQPA PCEFEKEKGE CAVHKGRKNP  180
HDDCLLFEEE SRRSKQLAVS EEETVREMFD KVLLCNGECE LRAPLPAEAR NCGVYVKGSG  240
NKRGRKKGKS GASAEDDAVD LTTLLIHCAQ AAAIDDHRNS NELLKQIRQR SSAYGDAGQR  300
LAHCFANALE ARLAGTGSNI YRSLAAKRTS VYDILNAFKL YVTACPFKKI SNFFSIEAIL  360
NASKGMTRLH IVDYGIQYGF QWPIFFQRIS KRPGGPPSVR ITGVDLPQPG FRPAQLIEAT  420
GRRLHDYARM FNVPFEYHAI AAKWDTIRVE DLKIDKDKDE LLVVNCLFRM RNMMDEMVTD  480
DSPRMQVLKT IRKMNPNLFI HGVVNGTYNA PFFVTRFKEA LFYYSSLFDM LETTASRVDE  540
NRLLIERDLF GREALNVVAC EGTERVERPE TYKQWQVRNI RAGFKQLPLN QETVKKARYK  600
VKKSYHRDFL VDEENKWMLQ GWKGRIIFAL SAWEPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-482656338374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0200000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629810.0AL662981.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637021.10.0scarecrow-like protein 9
SwissprotQ9XE581e-165SCL14_ARATH; Scarecrow-like protein 14
TrEMBLI1PP810.0I1PP81_ORYGL; Uncharacterized protein
STRINGORGLA04G0200000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138412529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-155SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]