PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA04G0191300.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 812aa MW: 86734 Da PI: 5.8214

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA04G0191300.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	70.9	1.5e-22	104	159	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r+eL+k+lgL+ rqVk+WFqNrR+++k ORGLA04G0191300.1 104 KKRYHRHTPQQIQELEAMFKECPHPDEKQRAELSKRLGLEPRQVKFWFQNRRTQMK 159 688999***********************************************998 PP
2	START	151.8	6e-48	315	555	2	206
HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCH.HHHHHHHHCCCGGCT-TT-S.. CS START 2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmv.lallveellddkeqWdetla.. 77 la +a++elvk+a+ ++p+W + es+n +e+l +f++ + + +ea+r+sg+v+ + a lve+l+d + +W+ ++ ORGLA04G0191300.1 315 LAMSAMDELVKMAQMGDPLWIPGAsipsspakESLNFEEYLNTFPPCIGvkpegYVSEASRESGIVIIDdGAALVETLMDER-RWSDMFScm 405 67899*************9877788999************9999**********998651558*****.***** PP ..EEEEEEEECTT.............EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EES CS START 78 ..kaetlevissg.............galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaell 148 ka+t+e is+g + +m+aelq+lsplvp R++ f+R+++ql +g+w++vdvS d+ + s + +++l ORGLA04G0191300.1 406 iaKASTTEEISTGvagsrngalllvsDEHSVMQAELQVLSPLVPiREVKFLRFSKQLADGVWAVVDVSADELMRDQGitsasSTANMNCRRL 497 ***************99999999999***********************************9987666666454555689 PP SEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 149 pSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 pSg+++++++ng kvtwveh++++++++h l+r+l++sgla ga +w atlqrqce+ ORGLA04G0191300.1 498 PSGCVLQDTPNGFVKVTWVEHTEYDEASVHPLYRPLLRSGLALGAGRWIATLQRQCEC 555 ******************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.94E-22	88	159	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-24	90	161	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.366	101	161	IPR001356	Homeobox domain
SMART	SM00389	3.2E-20	102	165	IPR001356	Homeobox domain
CDD	cd00086	1.12E-20	103	159	No hit	No description
Pfam	PF00046	7.5E-20	104	159	IPR001356	Homeobox domain
PRINTS	PR00031	8.7E-5	132	141	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	136	159	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.7E-5	141	157	IPR000047	Helix-turn-helix motif
PROSITE profile	PS50848	41.78	305	558	IPR002913	START domain
SuperFamily	SSF55961	2.47E-23	308	555	No hit	No description
CDD	cd08875	5.87E-103	309	554	No hit	No description
SMART	SM00234	2.6E-34	314	555	IPR002913	START domain
Pfam	PF01852	1.1E-39	315	555	IPR002913	START domain
SuperFamily	SSF55961	3.85E-17	575	777	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 812 aa Download sequence Send to blast
MQFPFSGAGP GVLTSSPALS LALADAVAGR NSGGGGKMVT AAHGGVGGGG GGRAKARDAL 60 EVENEISRSG SDHLDVVSCG DAGGGGGDDD DDEDAEHGNP PKRKKRYHRH TPQQIQELEA 120 MFKECPHPDE KQRAELSKRL GLEPRQVKFW FQNRRTQMKM QLERHENALL KQENDKLRSE 180 NLSIREATSN AVCVGCGGPA MLGEVSLEEH HLRVENARLK DELSRVCALA ARFLGKSISV 240 MAPPQMHQPH PVRGSSLELA VGGIGSMPSA TMPISTITDF AGAMSSSMGT VITPMKSEAE 300 PSAMAGIDKS LFLELAMSAM DELVKMAQMG DPLWIPGASI PSSPAKESLN FEEYLNTFPP 360 CIGVKPEGYV SEASRESGIV IIDDGAALVE TLMDERRWSD MFSCMIAKAS TTEEISTGVA 420 GSRNGALLLV SDEHSVMQAE LQVLSPLVPI REVKFLRFSK QLADGVWAVV DVSADELMRD 480 QGITSASSTA NMNCRRLPSG CVLQDTPNGF VKVTWVEHTE YDEASVHPLY RPLLRSGLAL 540 GAGRWIATLQ RQCECLALLM SSIALPENDS SAIHPEGKRS MLKLARRMTD NFCAGVSTSS 600 TREWSKLVGL TGNIGEDVHV MARKSVDEPG TPPGVVLSAA TSVWMPVMPE RLFNFLHNKG 660 LRAEWDILSN GGPMQEVTSI AKGQQNGNTV CLLKASPTKD KQNSMLILQE TCADASGSMV 720 VYAPVDIPAM HLVMSGGDSS CVALLPSGFA ILPAGPSIGA DHKMGGSLLT VAFQILANSQ 780 PSAKLTVESV ETVSNLISCT IKKIKTALHC DV

Sequence ? help Back to Top

Protein Sequence Length: 812 aa Download sequence Send to blast

MQFPFSGAGP GVLTSSPALS LALADAVAGR NSGGGGKMVT AAHGGVGGGG GGRAKARDAL  60
EVENEISRSG SDHLDVVSCG DAGGGGGDDD DDEDAEHGNP PKRKKRYHRH TPQQIQELEA  120
MFKECPHPDE KQRAELSKRL GLEPRQVKFW FQNRRTQMKM QLERHENALL KQENDKLRSE  180
NLSIREATSN AVCVGCGGPA MLGEVSLEEH HLRVENARLK DELSRVCALA ARFLGKSISV  240
MAPPQMHQPH PVRGSSLELA VGGIGSMPSA TMPISTITDF AGAMSSSMGT VITPMKSEAE  300
PSAMAGIDKS LFLELAMSAM DELVKMAQMG DPLWIPGASI PSSPAKESLN FEEYLNTFPP  360
CIGVKPEGYV SEASRESGIV IIDDGAALVE TLMDERRWSD MFSCMIAKAS TTEEISTGVA  420
GSRNGALLLV SDEHSVMQAE LQVLSPLVPI REVKFLRFSK QLADGVWAVV DVSADELMRD  480
QGITSASSTA NMNCRRLPSG CVLQDTPNGF VKVTWVEHTE YDEASVHPLY RPLLRSGLAL  540
GAGRWIATLQ RQCECLALLM SSIALPENDS SAIHPEGKRS MLKLARRMTD NFCAGVSTSS  600
TREWSKLVGL TGNIGEDVHV MARKSVDEPG TPPGVVLSAA TSVWMPVMPE RLFNFLHNKG  660
LRAEWDILSN GGPMQEVTSI AKGQQNGNTV CLLKASPTKD KQNSMLILQE TCADASGSMV  720
VYAPVDIPAM HLVMSGGDSS CVALLPSGFA ILPAGPSIGA DHKMGGSLLT VAFQILANSQ  780
PSAKLTVESV ETVSNLISCT IKKIKTALHC DV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA04G0191300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB101647	0.0	AB101647.1 Oryza sativa Japonica Group Roc4 mRNA for GL2-type homeodomain protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637147.1	0.0	homeobox-leucine zipper protein ROC4
Swissprot	Q7Y0V9	0.0	ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4
TrEMBL	I1PNZ4	0.0	I1PNZ4_ORYGL; Uncharacterized protein
STRING	ORGLA04G0191300.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1203	37	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wei J, et al. GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7. Plant Sci., 2016. 252: p. 133-143 [PMID:27717449] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]