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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
ORGLA04G0184100.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
bHLH |
| Protein Properties |
Length: 427aa MW: 46283.9 Da PI: 4.4074 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA04G0184100.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 22.1 | 2.7e-07 | 398 | 424 | 3 | 29 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC CS
HLH 3 rahnerErrRRdriNsafeeLrellPk 29
++h + ErrRR+++N+ f L++++P+
ORGLA04G0184100.1 398 KNHVMSERRRREKLNEMFLILKSVVPS 424
5899**********************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 427 aa
Download sequence Send
to blast |
MEETPLPSGK NFRSQLAAAA RSINWTYAIF WSISTSRPGV LTWKYGFYNG EIKTRKITNS 60
MNLTADELVL QRSEQLRELY DSLLSGECGH RARRPVAALL PEDLGDTEWY YVVCMTYAFG 120
PGQGLPGKSF ASNEFVWLTN AQSADRKLFH RALIAKSASI KTIVCVPFIM HGVLELGTTD 180
PISEDPALVD RIAASFWDTP PRAAFSSEAG DADIVVFEDL DHGNAAVEAT TTTVPGEPHA 240
VAGGEVAECE PNADNDLEQI TMDDIGELYS LCEELDVVRP LDDDSSSWAV ADPWSSFQLV 300
PTSSPAPDQA PAAEATDVDD VVVAALDVSS IDGSCRPSPS SFVAWKRTAD SDEVQAVPLI 360
SGEPPQKLLK KAVAGAGAWM NNGDSSAAAM TTQGSSIKNH VMSERRRREK LNEMFLILKS 420
VVPSIHK
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4rqw_A | 1e-21 | 24 | 196 | 23 | 192 | Transcription factor MYC3 |
| 4rqw_B | 1e-21 | 24 | 196 | 23 | 192 | Transcription factor MYC3 |
| 4rs9_A | 1e-21 | 24 | 196 | 23 | 192 | Transcription factor MYC3 |
| 4yz6_A | 1e-21 | 24 | 196 | 23 | 192 | Transcription factor MYC3 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 403 | 408 | ERRRRE |
| 2 | 404 | 409 | RRRREK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | OSU39860 | 0.0 | U39860.1 Oryza sativa transcriptional activator (Ra) mRNA, complete cds. |
| Publications
? help Back to Top |
- Pattanaik S,Xie CH,Yuan L
The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
Planta, 2008. 227(3): p. 707-15
[PMID:18075757] - Huang ZA, et al.
The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
J Genet Genomics, 2012. 39(3): p. 149-56
[PMID:22464474] - Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
[PMID:2674946] - Li P, et al.
Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
PLoS ONE, 2018. 13(1): p. e0190670
[PMID:29304111]
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