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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
ORGLA04G0183900.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
bHLH |
| Protein Properties |
Length: 451aa MW: 49556.1 Da PI: 4.6896 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA04G0183900.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 40.8 | 3.9e-13 | 377 | 423 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++h + ErrRR+++N+ f L++llP+ +K++Ka+iL +++ Y+k L
ORGLA04G0183900.1 377 KSHVMSERRRREKLNEMFLILKSLLPSV-----RKVDKASILAETITYLKVL 423
5899***********************7.....6***************977 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 451 aa
Download sequence Send
to blast |
MASAPPVQEE ALQAGTNHFR SRLAAAVRSI SWSYTIFWST STSLPGVLTW NDGFYNGEVK 60
TRKISNLEDL TADQLVLRRS EQLRELYYSL LSGECDHRAR KPVAALSPED IADTEWYYVV 120
CMTYAFRPGQ GLPGRSYASN RSVWLCNAQS ADSKTFLRAL LAKSATIQTI VCIPFMSGVL 180
ELGTTDPVSE DPNLVNRIVA YLKELQFPIC LEVPSSTPSP DETEDADTVF DGLIEEDQMV 240
ILQGEDELGD VVVAECETNG ANPETITMET DEFYSLCEEL DLDLGSYQLV PTSARETMAA 300
AAAAANDVDG VAYSHASCFV SWKRANPAEK VVAVPMTAGI ESQKLLKKAV GGGTAWMSNI 360
DGRGSVAITT TPGSSIKSHV MSERRRREKL NEMFLILKSL LPSVRKVDKA SILAETITYL 420
KVLEKRVKEL ESSSREPSRW RPTEIGQGKA P
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4rqw_A | 2e-21 | 5 | 198 | 2 | 188 | Transcription factor MYC3 |
| 4rqw_B | 2e-21 | 5 | 198 | 2 | 188 | Transcription factor MYC3 |
| 4rs9_A | 2e-21 | 5 | 198 | 2 | 188 | Transcription factor MYC3 |
| 4yz6_A | 2e-21 | 5 | 198 | 2 | 188 | Transcription factor MYC3 |
| 5t0f_A | 2e-21 | 5 | 198 | 2 | 188 | Transcription factor MYC3 |
| 5t0q_A | 2e-21 | 5 | 198 | 2 | 188 | Transcription factor MYC3 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 382 | 387 | ERRRRE |
| 2 | 383 | 388 | RRRREK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB021080 | 0.0 | AB021080.1 Oryza sativa Plw-OSB2 mRNA for R-type basic helix-loop-helix protein, complete cds. |
| Publications
? help Back to Top |
- Pattanaik S,Xie CH,Yuan L
The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
Planta, 2008. 227(3): p. 707-15
[PMID:18075757] - Huang ZA, et al.
The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
J Genet Genomics, 2012. 39(3): p. 149-56
[PMID:22464474] - Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
[PMID:2674946] - Li P, et al.
Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
PLoS ONE, 2018. 13(1): p. e0190670
[PMID:29304111]
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