PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0183800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 553aa    MW: 60322.6 Da    PI: 5.0261
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0183800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.6e-13377423354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        ++h + ErrRR+++N+ f  L++++P+        K++Ka+iLe+++ Y+k L
  ORGLA04G0183800.1 377 KNHVISERRRREKLNEMFLILKSIVPSiH------KVDKASILEETIAYLKVL 423
                        57999**********************66......***************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.9E-5121202IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.834374423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.17E-15377428No hitNo description
SuperFamilySSF474591.57E-17377444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10378423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-16378441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-14380429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MASAPPVQEE PLQPGTNHFR SLLAAAVRSI SWSYAIFWSI STSCPGVLTW NDGFYNGVVK  60
TRKISKSADL TAGQLVVQRS EQLRELYYSL LSGECDHRAR RPIAALSPED LADTEWYYVV  120
CMTYSFQPGQ GLPGKSYASN ASVWLRNAQS ADSKTFLRSL LAKSASIQTI ICIPFTSGVL  180
ELGTTDPVLE DPNLVNRIVA YFQELQFPIC LEVLMSTSPS PNETEDADIV SEGLITHNAI  240
EEGQMVVSDE CVSNANRDPI TMEIDELYSI YEDLDLDTVR FLEDNGWPVN PSSFQLVPAS  300
STEAVAAAAA ANDVDGVANS QVSCFMAWKS AKSNEMAVPV VTGIESQKLL KKVVDCGARM  360
STGRGSRAAL TQESGIKNHV ISERRRREKL NEMFLILKSI VPSIHKVDKA SILEETIAYL  420
KVLEKRVKEL ESSSEPSHQR ATETGQQRRC EITGKELVSE IGVSGGGDAG REHHHVNVTV  480
TDKVVLLEVQ CRWKELVMTR VFDAIKSLCL DVLSVQASAP DGLLGLKIQA KFACSGSVAP  540
GMISEALQKA IGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-1952022192Transcription factor MYC3
4rqw_B6e-1952022192Transcription factor MYC3
4rs9_A6e-1952022192Transcription factor MYC3
4yz6_A6e-1952022192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1382387ERRRRE
2383388RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0183800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117040.0AK111704.1 Oryza sativa Japonica Group cDNA clone:J023013E24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635094.10.0anthocyanin regulatory R-S protein
SwissprotP130271e-176ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLI1PNR90.0I1PNR9_ORYGL; Uncharacterized protein
STRINGORGLA04G0183800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.15e-85bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]