PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0182200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 710aa    MW: 74008.9 Da    PI: 5.7388
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0182200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS265.42e-813537093374
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        + L ++A+a + g+   a+++Larl+++  p g+p+ R a+y++ AL   la+      +  +++ ts+ +++ +l+a+k fs++sP+l+f+
  ORGLA04G0182200.1 353 DELAAAAKATEVGNSIGAREILARLNQQLPPIGKPFLRSASYLKDALLLALAD-----GHHAATRLTSPLDVALKLTAYKSFSDLSPVLQFA 439
                        7899*************************************************.....6666777888888********************* PP

               GRAS  95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                        ++t  qa+l+++++   +++ +iDfd++ G+QW+++lq+La R      + p+l++T+++s++s++  el+ t+++L++fA+ lg+pfefn+
  ORGLA04G0182200.1 440 NFTVTQALLDEIASTtaSCIRVIDFDLGVGGQWASFLQELAHRCgsggVSLPMLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFEFNA 531
                        **********999887799************************96544459***************************************** PP

               GRAS 181 lvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                        +   +l+++++ eL   + +E++aV+l +              + +++L+lvk+l Pk+vv ++  +d+++ +F ++fl++l+ +  l++sl
  ORGLA04G0182200.1 532 I---NLDAFDPMELIAPTaDEVVAVSLPVGCSART--------PLPAMLQLVKQLAPKIVVAIDYGSDRSDLPFSQHFLNCLQSCLCLLESL 612
                        9...999999999966557**********877776........5677********************************************* PP

               GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                        +a  ++++++ +k+Er+l++++++++v  + ++      ++  Wr  l++aGF p pls+ a++qa++ll++v+++g++ve++ + l l+W+
  ORGLA04G0182200.1 613 DAA-GTDADAVSKIERFLIQPRVEDAVLGRRRA-----DKAIAWRTVLTSAGFAPQPLSNLAEAQADCLLKRVQVRGFHVEKRGAGLALYWQ 698
                        999.8999*******************977665.....88899************************************************* PP

               GRAS 364 drpLvsvSaWr 374
                        + +LvsvSaWr
  ORGLA04G0182200.1 699 RGELVSVSAWR 709
                        **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.434325689IPR005202Transcription factor GRAS
PfamPF035146.9E-79353709IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MRAAPFSADG NGAAELAGSI EALLWPEDKG GGGGGGGGSL LVEPRSVLDC RGSPSPPNST  60
STLSSSHGSG AADSISTGVA AVAESSAAAA EATRWAAPGE HGGGGGGELP PIPGALDVGF  120
VAEESWDAML GDAAAAAGQE QTFLNWIMAA PGDMEPQAPG LSQQQLLANA AGFGFPLQHH  180
PGGVSSPAAL ASDLSSSGGR SLTSSSGSNS KATSAFGLLS PEAALQPPPA TTAPFHNGAD  240
MKPPLLGLPS PTLLLNQHQP TPASTLFMPF PSFSDHQQQP LLQPPPKRHH SVPDNLFLLH  300
NQPQPPPPAP AQCLPFPTLH STVPFQLQPS MQHPRNAMKS TAAAAAQQQH LLDELAAAAK  360
ATEVGNSIGA REILARLNQQ LPPIGKPFLR SASYLKDALL LALADGHHAA TRLTSPLDVA  420
LKLTAYKSFS DLSPVLQFAN FTVTQALLDE IASTTASCIR VIDFDLGVGG QWASFLQELA  480
HRCGSGGVSL PMLKLTAFVS AASHHPLELH LTQDNLSQFA ADLGIPFEFN AINLDAFDPM  540
ELIAPTADEV VAVSLPVGCS ARTPLPAMLQ LVKQLAPKIV VAIDYGSDRS DLPFSQHFLN  600
CLQSCLCLLE SLDAAGTDAD AVSKIERFLI QPRVEDAVLG RRRADKAIAW RTVLTSAGFA  660
PQPLSNLAEA QADCLLKRVQ VRGFHVEKRG AGLALYWQRG ELVSVSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-283517094375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0182200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066330.0AL606633.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02, complete sequence.
GenBankAL6066470.0AL606647.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637143.10.0scarecrow-like protein 27
TrEMBLI1PNQ30.0I1PNQ3_ORYGL; Uncharacterized protein
STRINGORGLA04G0182200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-83GRAS family protein