PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0177300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 330aa    MW: 34863.8 Da    PI: 5.9561
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0177300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.8e-20140190255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g
  ORGLA04G0177300.1 140 KYRGVRQRP-WGKFAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRG 190
                        8********.**********96554..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-32139199IPR001471AP2/ERF domain
PROSITE profilePS5103224.184140198IPR001471AP2/ERF domain
SMARTSM003805.8E-38140204IPR001471AP2/ERF domain
CDDcd000181.40E-29140199No hitNo description
SuperFamilySSF541711.18E-22140199IPR016177DNA-binding domain
PfamPF008471.7E-14140190IPR001471AP2/ERF domain
PRINTSPR003671.7E-13141152IPR001471AP2/ERF domain
PRINTSPR003671.7E-13180200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDFHHGDADD FALEFIREHL LGVDGATAMA TEPAGLEVVE PAAAYPPMFL PRHDQQEQHG  60
CHVELTHEHV ESAPAAEAAA AAFRAAPAQP AAEVMIKFGG EASPVRPSSS LTVTVPPSSF  120
GSWASAAAPA AAAVVDDFRK YRGVRQRPWG KFAAEIRDPK RRGSRVWLGT YDTPVEAARA  180
YDRAAFRMRG TKAILNFPNE VGTRGAELWA PPPPPPAHSA AASTTNKRKR QPSEDPDDGV  240
EVIGVVSKAV KTEAPTSNSS SLSSSLTSRD TTPATSSAGA EHAGAAAESS PATPSSWSWE  300
QYWEALLGGL PPLSPLSPHP ALGFPQLTVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-26141203668ATERF1
3gcc_A1e-26141203668ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0177300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1091410.0AK109141.1 Oryza sativa Japonica Group cDNA clone:002-155-E09, full insert sequence.
GenBankAL6070060.0AL607006.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence.
GenBankAL7316130.0AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAY3393790.0AY339379.1 Oryza sativa (japonica cultivar-group) Ap26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635116.11e-158ethylene-responsive transcription factor ERF105
TrEMBLI1PNK40.0I1PNK4_ORYGL; Uncharacterized protein
STRINGORGLA04G0177300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-32ethylene responsive element binding factor 5