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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
ORGLA04G0160200.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
ARF |
| Protein Properties |
Length: 393aa MW: 42978.7 Da PI: 8.0715 |
| Description |
ARF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA04G0160200.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 76.6 | 2.8e-24 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
f k+lt+sd+++ g +++p+ +ae++ ++++ + + +d +g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF+
ORGLA04G0160200.1 126 FAKTLTQSDANNGGGFSVPRFCAETIfpeldysSEPPVQ--SVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFM-- 213
89*********************999****987656666..5************************************************.. PP
SSSEE..EEEEE-S CS
B3 86 grsefelvvkvfrk 99
++++++ +v+++r+
ORGLA04G0160200.1 214 RDEGGNIHVGLRRA 227
5699*******996 PP
|
| 2 | Auxin_resp | 119.9 | 2e-39 | 281 | 364 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
aa++a+t+++Fev+Y+Prast+eF+v+++ v++a+ v++++GmRfkmafetedss++++ +Gtv+gv+++dpvrWp+S+Wr+L+
ORGLA04G0160200.1 281 AATRATTGQPFEVLYYPRASTPEFCVRAAAVRTAMAVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQASDPVRWPQSPWRLLQ 364
78999*****************************************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 393 aa
Download sequence Send
to blast |
MLPFMELAGP TEGDGGGSVD SQLWAACAGS MSSVPPVGAA VYYFPQGHAE QASAAVDLSS 60
ARVPPLVPCR VVAVRFMADA ESDEVFAKIR LVPLRPGDAV VDVGEAAAAE ARREEENSSR 120
PRPTSFAKTL TQSDANNGGG FSVPRFCAET IFPELDYSSE PPVQSVCAKD VHGVEWTFRH 180
IYRGTPRRHL LTTGWSPFVN KKQLTAGDSI VFMRDEGGNI HVGLRRAKRG FCSIGGDDES 240
LSSMPGWDQY RGLMRRNATA TATGGRTPPK GKVPPENVLT AATRATTGQP FEVLYYPRAS 300
TPEFCVRAAA VRTAMAVQWC PGMRFKMAFE TEDSSRISWF MGTVAGVQAS DPVRWPQSPW 360
RLLQVHIHGT NMRQPQLDHD RVVEFLINWP PRR
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AL662958 | 0.0 | AL662958.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11, complete sequence. |
| GenBank | AL731629 | 0.0 | AL731629.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13, complete sequence. |
| GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
