PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0140000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 373aa    MW: 39653.6 Da    PI: 8.6585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0140000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11301346655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR ri +++ +L+ l+P+     +k  s +++L +Av++Ik Lq
  ORGLA04G0140000.1 301 SIAERERRTRISEKLRKLQALVPNM----DKQTSTSDMLDLAVDHIKGLQ 346
                        689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.215295345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15298361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-12299350No hitNo description
Gene3DG3DSA:4.10.280.107.9E-14300360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-13301351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-9301346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MNPAPSRAPQ RQQRGGEMSA RYGGGLQFFA DAPPAGVEGG AATARTFFPV PGGGGEQQPP  60
ERAMRQQHYG GGGSGAAEIS LGHGHGHGHG HGGQHHFHQF GVEAKDGGGG DQSGFLTRHN  120
SSPPGFFSSP VMDNGFSSSA RPAGSSLGEV RHGAMSSSSN NNKKMKAPLS FASSRQGSGG  180
LSQISEDGIP DLTDSIHGAA HHHGRSEENV STHDHVVRSF SSGGFSIGSW EDSNSIVFST  240
STGKSGAHGN DDIIATLSNY ESQQLVAPRE MAGVEKYLQM QHDQVPFRVR AKRGCATHPR  300
SIAERERRTR ISEKLRKLQA LVPNMDKQTS TSDMLDLAVD HIKGLQSQLQ TLKEDKEKCT  360
CSCKQASRNR PAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0140000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680390.0AK068039.1 Oryza sativa Japonica Group cDNA clone:J013131B20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636683.10.0transcription factor bHLH129
TrEMBLI1PMI10.0I1PMI1_ORYGL; Uncharacterized protein
STRINGORGLA04G0140000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141882026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-44bHLH family protein