PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 385aa MW: 41968.9 Da PI: 6.0253

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA04G0137200.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85	9e-27	49	117	2	70
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W ++e+l+Li++rrem+++++++k++k+lWe++s++mre+gf rsp++C++kw+nl k++kk + ++++ ORGLA04G0137200.1 49 WVQDETLCLIALRREMDSHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKWRNLLKEFKKARSHARG 117 ***************************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.293	41	105	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.0E-4	42	109	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-5	45	107	IPR001005	SANT/Myb domain
CDD	cd12203	2.00E-28	47	112	No hit	No description
Pfam	PF13837	4.0E-18	48	119	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MLLSGPSPQQ PTPPLLLPES SGEDGGHDSS SRAATSGGGG GPKKRAETWV QDETLCLIAL 60 RREMDSHFNT SKSNKHLWEA ISARMREQGF DRSPTMCTDK WRNLLKEFKK ARSHARGGGG 120 GGVGGGGAGI GGGNCPAKMA CYKEIDDLLK RRGKPTGGGG AAVGSGAVKS PTVTSKIDSY 180 LQFDKGFEDA SIPFGPVEAS GRSLLSVEDR LEPDSHPLAL TADAVATNGV NPWNWRDTST 240 NGGDNQVTFG GRVILVKWGD YTKRIGIDGT ADAIKEAIKS AFGLRTRRAF WLEDEDEVVR 300 SLDRDMPVGT YTLHLDTGMT IKLYMFENDE VRTEDKTFYT EEDFRDFLSR RGWTLLREYS 360 GYRIADTLDD LRPGVIYEGM RSLGD

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MLLSGPSPQQ PTPPLLLPES SGEDGGHDSS SRAATSGGGG GPKKRAETWV QDETLCLIAL  60
RREMDSHFNT SKSNKHLWEA ISARMREQGF DRSPTMCTDK WRNLLKEFKK ARSHARGGGG  120
GGVGGGGAGI GGGNCPAKMA CYKEIDDLLK RRGKPTGGGG AAVGSGAVKS PTVTSKIDSY  180
LQFDKGFEDA SIPFGPVEAS GRSLLSVEDR LEPDSHPLAL TADAVATNGV NPWNWRDTST  240
NGGDNQVTFG GRVILVKWGD YTKRIGIDGT ADAIKEAIKS AFGLRTRRAF WLEDEDEVVR  300
SLDRDMPVGT YTLHLDTGMT IKLYMFENDE VRTEDKTFYT EEDFRDFLSR RGWTLLREYS  360
GYRIADTLDD LRPGVIYEGM RSLGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	8e-38	43	144	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00640	PBM	Transfer from MDP0000164819	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA04G0137200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK103296	0.0	AK103296.1 Oryza sativa Japonica Group cDNA clone:J033125B02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635625.2	0.0	trihelix transcription factor GT-4
Swissprot	Q9FX53	1e-139	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	I1PMF3	0.0	I1PMF3_ORYGL; Uncharacterized protein
STRING	ORGLA04G0137200.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5631	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-135	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]