PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0127400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 996aa    MW: 103570 Da    PI: 6.7153
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0127400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30517574260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        +Dgy+WrKYGqK+vk se+prsYY+Ct+a+C vkkkvers+ +++v+ei+Y+g+Hnh+k
  ORGLA04G0127400.1 517 EDGYSWRKYGQKQVKHSEYPRSYYKCTHASCAVKKKVERSH-EGHVTEIIYKGTHNHPK 574
                        8****************************************.***************85 PP
2WRKY104.74.9e-33752810159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+++d k v++tYeg+Hnhe
  ORGLA04G0127400.1 752 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCLVRKHVERASHDLKSVITTYEGKHNHE 810
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-27505575IPR003657WRKY domain
PROSITE profilePS5081123.571511575IPR003657WRKY domain
SuperFamilySSF1182901.09E-24512575IPR003657WRKY domain
SMARTSM007746.1E-33516574IPR003657WRKY domain
PfamPF031062.5E-23517573IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-36737812IPR003657WRKY domain
SuperFamilySSF1182908.63E-29744812IPR003657WRKY domain
PROSITE profilePS5081137.7747812IPR003657WRKY domain
SMARTSM007749.2E-39752811IPR003657WRKY domain
PfamPF031066.4E-25753810IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 996 aa     Download sequence    Send to blast
DDNDHDAGSA AAXPPRCRLP PRQRSXRXIC CRLLSSLAPL GRADPPPAPL LAGEGRGGEA  60
ATRRRGNSSS PDNDDDCRND DDYRDDDVGA MTDEGGDTAS PLPMAMKTAT TMAPTPVEAA  120
ADGGGEPSSA GGGGGXIXCL RRYCPPTKII YFRRPLLAGK MNGSSRSLWS SLLDAHHLSL  180
KNPCALFRLR LWSLWPLPIW LSPPCWSMAF LNLDRLCSVC HLGEMEGDIA MEEWKDSNHR  240
GADYLMTMPM QNFLADAFPP PELLEGEGGF EKHGLSVAVG SPPPTPPPPE DGCSPLPLTP  300
QFGQKFGSGG GGGGGGSLAD RRARGGFSNV ARISVPYNQP AADVSSAGAP SPYVTIPPGL  360
SPTTLLESPV FFSNAMGQAS PTTGKLHMLG GANDSNPIRF ESPPIEEGSG AFSFKPLNLA  420
SSHYAAAEKT KSLPNNQHQS LPISVKTEAT SIQTAQDEAA ANQLMQPQFN GGKLSRAAPD  480
NGGDGEGQPA EGDAKADSSS GAAAVAVVAA AAAAVAEDGY SWRKYGQKQV KHSEYPRSYY  540
KCTHASCAVK KKVERSHEGH VTEIIYKGTH NHPKPAASRR PPVHPPPPPP ATTTTTTTPL  600
PPGDEQADHA PDGGGGSTPA GAGQAGAEWH NGGVVGGEGL VDATSSPSVP GELCESTASM  660
QVHDGAAAAQ LGESPEGVDV TSAVSDEVDR DDKATHVLPL AAAAAAADGE SDELERKRRK  720
LDSCATMDMS TASRAVREPR VVIQTTSEVD ILDDGYRWRK YGQKVVKGNP NPRSYYKCTH  780
PGCLVRKHVE RASHDLKSVI TTYEGKHNHE VPAARNSGHP AGSASPGGGA GSSSQPHGVG  840
VGGRRPEVPS VQESLMRLGG GCGAAPFPPH FGLHPPPPPP RDPLAPMSNF PYSLGHAPSP  900
ALRGLPPPPP PPPSASALAV AGLGGVVEGL KYPMLAPPSV HSLLRHRQGG GMEAVVVPKA  960
EVKQEAMPPA AAAAGAGRGA AVYQQAMSRV SLGNQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-35499813278Probable WRKY transcription factor 4
2lex_A1e-35499813278Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0127400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418430.0AY341843.1 Oryza sativa (japonica cultivar-group) WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634497.10.0probable WRKY transcription factor 2 isoform X2
TrEMBLI1PM550.0I1PM55_ORYGL; Uncharacterized protein
STRINGORGLA04G0127400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.14e-96WRKY DNA-binding protein 2