PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0116800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family EIL
Protein Properties Length: 447aa    MW: 48398.8 Da    PI: 4.6776
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0116800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3362.48.2e-111413262285
                        XXXXXXXXXXXXXXXXXXXXXX..XXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
               EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaa.........tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpv 84 
                        +lkkrmwkdqmll++l++r+ ++ + + ++         + a+ ++ ++ ++rrk+m raQDg+L++Mlk+me+cna+GfvYgi++e+g pv
  ORGLA04G0116800.1  41 DLKKRMWKDQMLLMKLEGRSGHEGALAAQDhrvvrgeeeAAAAAEEPPEARYRRKAMLRAQDGVLRHMLKMMEACNARGFVYGIVDESGVPV 132
                        8******************9997766655556776666555555669********************************************* PP

                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S CS
               EIN3  85 egasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtG 176
                        +g+sdsLr+WWk++v+fdr+gp+a+s +       s +    +++ s  h l ++qD+tlgSLLsal+qhc+ppqr+fpl++g++pPWWPtG
  ORGLA04G0116800.1 133 SGSSDSLRGWWKDDVAFDRAGPTALSGRGGRGSPRSPAAAA-AAAASFLHGLLDIQDSTLGSLLSALIQHCEPPQRSFPLDRGLPPPWWPTG 223
                        ****************************5555555544444.55899********************************************* PP

                        --HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXX CS
               EIN3 177 kelwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahsssl 267
                         e+wwg +g ++++qg+ppy+kphdlkkawk+s+L+avikh+sp++++ir+l++qsk+lq+kmsa++ +++++v+ qee++ ++  ++    
  ORGLA04G0116800.1 224 GEAWWGLQGeAQASQGPPPYRKPHDLKKAWKISLLSAVIKHLSPRFDQIRKLVWQSKRLQHKMSARDADTWSRVITQEEALSRHALSSL--- 312
                        *******************************************************************************9776544432... PP

                        XXXXXXXXXXXXXXXXXX CS
               EIN3 268 rkqspkvtlsceqkedve 285
                              + l+++++e +e
  ORGLA04G0116800.1 313 ----HITPLDDDDDEPNE 326
                        ....22233333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048736.4E-11741302No hitNo description
Gene3DG3DSA:1.10.3180.108.3E-64175310IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.48E-56180305IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MDDKGKAKAA DAAAAAEAAP EQEEEFFSDS ESGSESIEIA DLKKRMWKDQ MLLMKLEGRS  60
GHEGALAAQD HRVVRGEEEA AAAAEEPPEA RYRRKAMLRA QDGVLRHMLK MMEACNARGF  120
VYGIVDESGV PVSGSSDSLR GWWKDDVAFD RAGPTALSGR GGRGSPRSPA AAAAAAASFL  180
HGLLDIQDST LGSLLSALIQ HCEPPQRSFP LDRGLPPPWW PTGGEAWWGL QGEAQASQGP  240
PPYRKPHDLK KAWKISLLSA VIKHLSPRFD QIRKLVWQSK RLQHKMSARD ADTWSRVITQ  300
EEALSRHALS SLHITPLDDD DDEPNEGPTP RESHADKRKR EVGGGGGEEM QLSLPADIDV  360
VPEVDRSSID EVMKLYYSCL QGTDTDGGGG EQGKDVAAGA CGDGSVAPET VHVDDDDMLE  420
GLLGVAQVVD MSDFPDSPIW HWGSSSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A3e-491813064128Protein ETHYLENE INSENSITIVE 3
4zds_B3e-491813064128Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0116800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8551640.0CR855164.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0523F07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635387.10.0ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ52e-91EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLI1PLU90.0I1PLU9_ORYGL; Uncharacterized protein
STRINGORGLA04G0116800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.11e-88EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]