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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA04G0108200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 184aa MW: 19726.2 Da PI: 5.3535 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.1 | 2.1e-18 | 12 | 62 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++k +g+Wv+eIr p g ++r++lg+f +ae+Aa a++ a+++l+g ORGLA04G0108200.1 12 CQYRGVRRRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 62 68*****998.**********8...325*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.1E-12 | 12 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.18E-30 | 12 | 70 | No hit | No description |
SMART | SM00380 | 6.1E-37 | 13 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-22 | 13 | 71 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.709 | 13 | 70 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-31 | 13 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-10 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-10 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MAAAAAAAGG GCQYRGVRRR KWGKWVSEIR QPGTKTRIWL GSFESAEMAA VAHDVAALRL 60 RGRDAQLNFP GSVDRLPRPA SSRPGDIRAA AAEAADRVRR EPALVVVRGA AAAGGELAAA 120 RWAGVEVEVE QQLGGSDEEF EVDSPRLWAE MAEAMLLDPP VWAVDVSEME GPHCWAHGSL 180 WDAC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-17 | 11 | 74 | 3 | 67 | ATERF1 |
3gcc_A | 3e-17 | 11 | 74 | 3 | 67 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA04G0108200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL731606 | 0.0 | AL731606.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058G03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194473.1 | 2e-75 | ethylene-responsive transcription factor ERF021-like | ||||
TrEMBL | I1PLL3 | 1e-125 | I1PLL3_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA04G0108200.1 | 1e-126 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 6e-25 | ERF family protein |