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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA04G0102200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ZF-HD | ||||||||
Protein Properties | Length: 285aa MW: 29026.4 Da PI: 8.1747 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 88.1 | 8.6e-28 | 28 | 75 | 5 | 57 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +YkeC++NhAa++Gg+a+DGCgE+mp+ ++++lkCaACgCHR+FHRr ORGLA04G0102200.1 28 KYKECMRNHAAAMGGQAFDGCGEYMPA-----SPDSLKCAACGCHRSFHRRAA 75 7*************************9.....799****************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 2.5E-24 | 28 | 74 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-20 | 28 | 73 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.5E-22 | 28 | 74 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.048 | 29 | 74 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.68E-18 | 157 | 227 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-28 | 161 | 228 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-26 | 169 | 226 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MMDHLSLVPY EGGSAGGGGG GGGGGGGKYK ECMRNHAAAM GGQAFDGCGE YMPASPDSLK 60 CAACGCHRSF HRRAAAGIGG GPVFFRPPPP PQPHSHHAAL QGFLPSSVPA PPPPPQLALP 120 YHAVPAAAWH HAAAAAAGRA GSETPPRMDD FGPGSAGGSG SGGGGIFGRK RFRTKFTPEQ 180 KERMREFAEK QGWRINRNDD GALDRFCVEI GVKRHVLKVW MHNHKNQLAS SPTSAAAAAA 240 GVMNPGAGIG LGTGISGDGD GDDDDTDDSP PRAAVSSPSP SPISV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-24 | 170 | 235 | 18 | 80 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA04G0102200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR855153 | 0.0 | CR855153.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0823A09, complete sequence. | |||
GenBank | CR855188 | 0.0 | CR855188.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0102D10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635194.1 | 1e-111 | zinc-finger homeodomain protein 8 | ||||
Swissprot | Q7X7N3 | 1e-111 | ZHD8_ORYSJ; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | I1PLF3 | 0.0 | I1PLF3_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA04G0102200.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13649 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75240.1 | 7e-20 | homeobox protein 33 |