PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0098500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 333aa    MW: 35219.9 Da    PI: 9.7843
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0098500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.7e-11115158855
                        HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         Er RR+++++ f++L  llPk +     +K +Ka+i+ +A+ YIk L+
  ORGLA04G0098500.1 115 TERERRKKMKNMFSTLHGLLPKiP-----GKTDKASIVGEAIGYIKTLE 158
                        7*********************88.....9****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.764107157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-15111169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.11E-11112162No hitNo description
Gene3DG3DSA:4.10.280.106.9E-14112168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-7115163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-9115158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSQEGADLSQ DVDESPYHTA VVTTNNLVRS IKAEKSNSSS SSGKPVGTDI GLKVASPTMF  60
GFNTKIEGTG KNMAVKREEG EGGGRPGVSS GVSTRDTNGK GKNAMNMENA LHIWTERERR  120
KKMKNMFSTL HGLLPKIPGK TDKASIVGEA IGYIKTLEDV VQKLETIKTE RVRAHQWAAA  180
AAAAVAANGG GEGSSHSHSQ PPRHATAVTV AVAEPAPVAA AVNAQAPQKK AAAAAAPTLQ  240
TWSAPNITLT MAGVDAFINM CLPRQRASFT TVAFVLEKHQ IDVVTSTISA DHDKSLFSVH  300
VRLNEASLQS TEGLTPEAKY KLAVSELMVR LAE
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0098500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087280.0AK108728.1 Oryza sativa Japonica Group cDNA clone:002-150-C12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636599.10.0transcription factor bHLH95
TrEMBLI1PLB60.0I1PLB6_ORYGL; Uncharacterized protein
STRINGORGLA04G0098500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-21bHLH family protein