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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA04G0098100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 24513.9 Da PI: 7.726 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.1 | 2.9e-20 | 62 | 111 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae+Aa+a++aa+++++g ORGLA04G0098100.1 62 KYRGVRRRP-WGKWAAEIRDP-----HraARVWLGTFATAEDAARAYDAAALRFRG 111 8********.**********7.....338************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.0E-32 | 61 | 120 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.03E-17 | 62 | 121 | No hit | No description |
PROSITE profile | PS51032 | 25.488 | 62 | 119 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-23 | 62 | 120 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.0E-35 | 62 | 125 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-13 | 62 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 63 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MALSEPDLAA ETEAIVSALT HVVAYGGGGP PPTEETAASA VTRTAPWRAD GARQGAVPAA 60 RKYRGVRRRP WGKWAAEIRD PHRAARVWLG TFATAEDAAR AYDAAALRFR GGHARLNFPE 120 DAAAADARRA TDAAAAAAAA SSAPAALLES QPGDVADCLD YSRILAGAPE RPTSSTVTDG 180 FFGGGGNGRF LHSWSIGTSP SSSGSGSGGA VGGGGGGGAP VRPLFHGGNG WEQRGDSAYN 240 GF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-21 | 61 | 119 | 4 | 63 | ATERF1 |
3gcc_A | 6e-21 | 61 | 119 | 4 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA04G0098100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606632 | 0.0 | AL606632.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880432.1 | 1e-108 | dehydration-responsive element-binding protein 1C-like | ||||
TrEMBL | I1PLB2 | 1e-166 | I1PLB2_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA04G0098100.1 | 1e-167 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14299 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 5e-24 | ethylene response factor 110 |