PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0080100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 329aa    MW: 34870.5 Da    PI: 5.633
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0080100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.82.6e-2716101178
           trihelix   1 rWtkqevlaLiearremeerlr.rgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                        rWt+qe+l+Lie++r +e r r rg+       ++ ++W++v++++r++g+er+p+qC+++w+nl+++ykki+e+e++ +s+sss+
  ORGLA04G0080100.1  16 RWTRQEILVLIEGKRVVEGRGRgRGRggggaaaAEPTKWAAVAEYCRRHGLERGPVQCRKRWSNLAGDYKKIREWERSLSSPSSSS 101
                        8*******************99533234444549********************************************98887764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.6321681IPR017877Myb-like domain
PfamPF138373.9E-111693No hitNo description
Gene3DG3DSA:1.10.10.604.7E-51680IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSGGGEGSGR APRLPRWTRQ EILVLIEGKR VVEGRGRGRG RGGGGAAAAE PTKWAAVAEY  60
CRRHGLERGP VQCRKRWSNL AGDYKKIREW ERSLSSPSSS SSAAGMGKEV SFWAMRNDAR  120
RERRLPGFFD REVYDILEGR GGGNAAAAAA AGKEGEEEKA AVFDSGRAAA GGGGGGGDDG  180
LFSSSEEEED DDEATPPATT PAAAPAPPPA PAPAVPVLTS EKKSDPPRQD ASEQAGTSRA  240
KQPEQIVEDS PAQGAHKRQR SDDASGEAPD LQGQLIEILD RSSRMVAAQL EAQNINCQLD  300
REQRKDQVSS LLGVLGKVAD ALYRIADKM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0080100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636777.10.0trihelix transcription factor ASR3
TrEMBLI1PKT20.0I1PKT2_ORYGL; Uncharacterized protein
STRINGORGLA04G0080100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.13e-45Trihelix family protein