PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0072000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 465aa    MW: 51372.4 Da    PI: 4.5358
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0072000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-10136180655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           Er+RR r+++++ eLr l+P+      +K++Ka+i   Av Y+k+Lq
  ORGLA04G0072000.1 136 IVSERKRRVRMKEKLYELRALVPNI-----TKMDKASIIADAVVYVKDLQ 180
                        568*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-15127196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.10E-12128181No hitNo description
PROSITE profilePS5088815.294130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-15132195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-12136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-8136180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MEHHHLLLQL SPPPPPPPLP AVHLMMSPSF FDAGVFADVG GDWMEDLMHL GELFGVGVGG  60
DDDDNGGVDG RVGGGDDRMQ EWQNNCEGGG SPDHQPSCGD GDGDGDGDVS PRDGELGDGD  120
GDNSATRKRR DRSKTIVSER KRRVRMKEKL YELRALVPNI TKMDKASIIA DAVVYVKDLQ  180
AHARKLKEEV AALEEARPIR PPPPSAAAXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXXXXXXXXX XFFVTVECEP AAAAARGGGG GVAAPVCAAV ESLSCFTVES STVGCSPDRV  420
VATLTLKVSE AEEDVSAISE CTVKLWVMAA LLKEGFRPQP TVQIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127142KRRDRSKTIVSERKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0072000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8350400.0CT835040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA119K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634338.16e-92transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.17e-21FER-like regulator of iron uptake