 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
ORGLA04G0053100.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 227aa MW: 26069.6 Da PI: 8.7524 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA04G0053100.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 83.3 | 1.5e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
kri+n++nrqvtfskRr g++KKA EL +LCda+v +i+fs tg+ly++ss
ORGLA04G0053100.1 9 KRIDNTTNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSS 59
79***********************************************96 PP
|
| 2 | K-box | 73 | 8.9e-25 | 84 | 170 | 12 | 98 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
++a+ +q+e++ L+++++nL +++R+llGe++++ ++++Lq L++q+e sl +iR+kK++ll e+i +l +k +q+en +Lr+k+
ORGLA04G0053100.1 84 SEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLVQKENSELRQKF 170
6789*********************************************************************************98 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 31.202 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 2.4E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 2.06E-42 | 2 | 76 | No hit | No description |
| SuperFamily | SSF55455 | 2.75E-32 | 2 | 87 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.4E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 4.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.4E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.4E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.5E-24 | 84 | 170 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 14.418 | 86 | 176 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 227 aa
Download sequence Send
to blast |
MGRGKIAIKR IDNTTNRQVT FSKRRGGLMK KARELAILCD ADVGLIVFSC TGRLYDFSSS 60
SMKSIIERYQ EAGEEHCRLL NPMSEAKFWQ REVTTLRQQV QNLHHNNRQL LGEEISNFTV 120
RDLQLLQNQV EMSLHSIRNK KDQLLAEEIL KLNEKGSLVQ KENSELRQKF NIAHQRNIEL 180
HKKLNCGEST SSEQVTRSSK DPGESSTPRE SRVCIDIELS QKGVEDE
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK102927 | 0.0 | AK102927.1 Oryza sativa Japonica Group cDNA clone:J033114E21, full insert sequence. |
| GenBank | AY177695 | 0.0 | AY177695.2 Oryza sativa (japonica cultivar-group) transcription factor MADS25 mRNA, partial cds. |
