PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORGLA04G0051300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 291aa MW: 31172.6 Da PI: 4.9279 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41 | 3.5e-13 | 96 | 141 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ++Er RR+r+N++++ Lr ++Pk +K++Ka+i++ A+ +I +Lq ORGLA04G0051300.1 96 NIAMERDRRKRLNEKLFALRAVVPKI-----TKMDKASIVRDAIAHIEKLQ 141 6789*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.193 | 91 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.64E-14 | 95 | 145 | No hit | No description |
SuperFamily | SSF47459 | 1.03E-15 | 95 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.9E-11 | 96 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-14 | 97 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-14 | 98 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 291 aa Download sequence Send to blast |
MEAAADMGVL LDLYWHTPHI FDLAVADSLL MDGFGGGMYG PAAPPATPAM VEKEYDESLS 60 ELYAYTSQSR YADSSSPDVV NSCSTAVASA AASSKNIAME RDRRKRLNEK LFALRAVVPK 120 ITKMDKASIV RDAIAHIEKL QEEERQLLDE ISVLQSAAAV AATVVEDVDD SGVTMPSMKK 180 LRSTPPLDGG GGALRVASSP PLQILEVETK ETEDFYGLIL QTSQSWPSDP QLQVSKVGEK 240 TVAVSIRCAK TRGAMAKVCH AVVSLRLKVV SASVAAVDGT IVHTMFVEVT N |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | ORGLA04G0051300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL731621 | 1e-155 | AL731621.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0013O03, complete sequence. | |||
GenBank | AP014960 | 1e-155 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 1e-155 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633867.1 | 1e-158 | transcription factor bHLH35 | ||||
TrEMBL | I1PJZ4 | 0.0 | I1PJZ4_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA04G0051300.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1044 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57150.2 | 2e-33 | bHLH family protein |