 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
ORGLA04G0016600.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C2H2 |
| Protein Properties |
Length: 365aa MW: 38499.3 Da PI: 7.7318 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA04G0016600.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 22.5 | 3e-07 | 197 | 219 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C+ Cgk F+r nL+ H+r H
ORGLA04G0016600.1 197 HYCQVCGKGFKRDANLRMHMRAH 219
68*******************99 PP
|
| 2 | zf-C2H2 | 12.9 | 0.00033 | 283 | 306 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23
y+C+ Cg k F s+L++H + +
ORGLA04G0016600.1 283 YVCGRCGgKQFAVLSDLRTHEKHC 306
9*******************9876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 365 aa
Download sequence Send
to blast |
MNPQEFQFFQ GVEQEMLLLS HGGGGAAAPA PAAASDDVLA YHVGVLRDKV QQLEPLVGMV 60
VSPAAPHGHL RRDAAAMAAS SACSVLQEIT AAASAVAHRL EQASAASAAA SFRRGVAFAD 120
DAHAGGEQMF AAGAHGGGEG GGDEADASLF HHQPTVFRAG ATTTVAASSS GGGDDDGDGE 180
VDVVELEASY LLARYTHYCQ VCGKGFKRDA NLRMHMRAHG DEYKTAAALA STAMKAALAA 240
KRCWYSCPAE GCRWNRRHPR FQALKSVVCA KNHYRRSHCP KMYVCGRCGG KQFAVLSDLR 300
THEKHCGELR WLCSCGTFFS RKDKLMGHVA LFAAGHAPVP VAPEASPSTT TTGTTTDRSR 360
TGLID
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK243285 | 0.0 | AK243285.1 Oryza sativa Japonica Group cDNA, clone: J100051N01, full insert sequence. |
| GenBank | AL662959 | 0.0 | AL662959.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019G23, complete sequence. |
| GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
