PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0402800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 349aa    MW: 39817.7 Da    PI: 7.1984
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0402800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS208.92.8e-6416325110374
               GRAS 110 ervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp. 198
                        + vHi+D++ s  ++ QW+ Ll+ +  Rp+g+p+l +T++++    +++ l  +++ L+k Ae+lgv+f+f   v  rle+l++++Lr    
  ORGLA03G0402800.1  16 QVVHIVDLSCSaaHPWQWLKLLDDFHGRPGGAPELYLTVLHD----DNDFLADMQSLLSKKAESLGVSFHFIS-VIGRLETLDFSNLRSTFq 102
                        679*****8653389***************************....9**************************.799**********54444 PP

               GRAS 199 ...gEalaVnlvlqlhrll.........................................desvsleserdevLklvkslsPkvvvvveqea 246
                           g a+a++++lq+hrll                                           s  +++   ++L++++ l+P+++ ++eq+a
  ORGLA03G0402800.1 103 ikfGVAVAISCALQMHRLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylqTPSPRTPKLLARLLSAIRALKPNIMLIMEQDA 194
                        555*******************************************************98666777778899******************** PP

               GRAS 247 dhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                        dhn+  F +rf e l+yy+alfd++++ ++++    +er  vEr++l++ei+n++ ceg +r erhe+l +W + +ee+GF++v+ls +a  
  ORGLA03G0402800.1 195 DHNTLLFCDRFNEVLNYYAALFDCFHVVAAANPgrtDERLRVERMILREEIKNILVCEGVHRHERHERLDQWAMHMEESGFHNVQLSFSAIR 286
                        ************************977655444455******************************************************** PP

               GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        + k  l  ++ +  + +e++g+l+l+    +L+s+SaWr
  ORGLA03G0402800.1 287 EGKENLLSFGLKNCQNKEDRGCLLLCRGYTNLYSISAWR 325
                        **********888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.4791305IPR005202Transcription factor GRAS
PfamPF035149.7E-6216325IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
DYLYHACNLL TQVDLQVVHI VDLSCSAAHP WQWLKLLDDF HGRPGGAPEL YLTVLHDDND  60
FLADMQSLLS KKAESLGVSF HFISVIGRLE TLDFSNLRST FQIKFGVAVA ISCALQMHRL  120
LLVDDNLSST SIAQLQKMAN FTQPKQMASS VCSPASTLNY LQTPSPRTPK LLARLLSAIR  180
ALKPNIMLIM EQDADHNTLL FCDRFNEVLN YYAALFDCFH VVAAANPGRT DERLRVERMI  240
LREEIKNILV CEGVHRHERH ERLDQWAMHM EESGFHNVQL SFSAIREGKE NLLSFGLKNC  300
QNKEDRGCLL LCRGYTNLYS ISAWRQNRGS SSGSREHMLV QRQIIWPFQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0402800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3780340.0FQ378034.1 Oryza glaberrima chromosome 11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616660.10.0scarecrow-like protein 3 isoform X1
TrEMBLI1PI320.0I1PI32_ORYGL; Uncharacterized protein
STRINGORGLA03G0402800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.19e-56scarecrow-like 3