PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

ORGLA03G0393200.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 1267aa MW: 142928 Da PI: 6.8285

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA03G0393200.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.1	6.6e-14	868	954	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtk.leleHnHe 88 +fY++YA ++GF+++ks+++k r+ +C++egk+ ++ ++ +++ +r+++++gCka +k++ ++ +v++ +el+HnH+ ORGLA03G0393200.1 868 NFYQRYACHAGFDIKKSRMHKA-------FREVCCTREGKHVSKVNN-GDRQWRRPSKKMGCKAYVKLRHNYdggALSSVVYDvVELQHNHP 951 6**************99998.......7899******9999.88999**************9643234456651569*** PP FAR1 89 lap 91 l+p ORGLA03G0393200.1 952 LTP 954 985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54001	1.22E-14	677	836	No hit	No description
Pfam	PF02902	6.8E-5	732	831	IPR003653	Ulp1 protease family, C-terminal catalytic domain
Pfam	PF03101	4.7E-9	868	954	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.223	1210	1246	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006508	Biological Process	proteolysis
GO:0008234	Molecular Function	cysteine-type peptidase activity
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1267 aa Download sequence Send to blast
MEMTGKMPAR VKRIRFANSQ NECEVVLPQT LASGGESSSR AVGEATXSKP KRRRRATSAG 60 EGPSGDEPSE TKGPNLTRCS AALVVQACRA LSTVHHEKLE EIGLDAVAYK SLESLEQPDL 120 IQWLMDRTDP DTMCISIDDD RKIPITSRTV RLVLGTLLGG NDIVLPSHKV VRTVHKSITD 180 ELGIHKKARL STKQLIEVIK SQKDDSRAIX YFIMVLMSKL LVPTTDFYVP KGDVWVASDL 240 DRVTAIDWSK AVFRAVNDSI RYWRQNPASS IASFVVFLVV LYLDNILPPR DIGLDLTFTP 300 RIQIFTKDIV DKLVAADQEA SGDGTPPFGN LPLQALESTC YANKPAGRAK GPMVEDIMAP 360 AYNFPNMSTI LGPHLAGLPS DQRLVLLESL AEYDRQAKES ALEIERQFRL VVDKQHMLCQ 420 SVIDVLQANR AAQPPPVVPQ AAQCQEASRR QSDVQFTSAE INPNDSEDQQ QQQHHGCNGS 480 PSVFDQHTIH PNAPTHVSPS MEIVPYIPPV RLEVADQPHL GSAHSPDLTQ RSPIPTDSAP 540 LTSEEVSAQY SAPDTAEEPL AIEVGGVIGN VPGVSTAIQT EDAPRAVDQE SHGTELLAET 600 NEDTDDANST PWSQPKRFIQ KPARFVSPVV VGPSIMPSDV SLSVQLRDFL LTNGGCMDMS 660 VFITTLIMYL CVKLLDIDSS VAYGNDELKS FSNGNLTEWL FIDAFSSILF KDDMRNMPDT 720 FGKRIFFPTS VSIIVPVLHH NHWSLYAINI AHGRVDIMDS NNYNLIGTLE SDHHCALSKR 780 IVKRLSNALH EVAPKSFCRF GGFRKNMMKC PKVQICSNDC VFYIMRFMEA YDGNRESIET 840 FSIPGPSVPP HMVPTEGMAF PTYDDAYNFY QRYACHAGFD IKKSRMHKAF REVCCTREGK 900 HVSKVNNGDR QWRRPSKKMG CKAYVKLRHN YDGGALSSVV YDVVELQHNH PLTPSPSAVK 960 HMRAHKNRDD TFMQFMDTMQ ESHVPQSCIM GVLFDLHGGQ ENIPFTSHDV ENRWHILNRH 1020 SDPLNTIFAR DAQIEPDMML CINQTYTPYE FETSWDQFIK RYDLEGCPTM KALYDIRDKW 1080 VPAFSRKEYC ERMTSTQRSE SMNKLVKHKF VDHQTTLHRF ARRILEVITD RKEKEAAETR 1140 AWSGKPVLAV RWPFVIQMSR LYTRAAFRLF EDALXDSTDF RITQDDNFRN GWLVSHTKLS 1200 EKHNWCXKQF KLIADVDAGV FTCECKQWEH TGMFCTHMLW AFVHVQLEKI PAAYILKSKF 1260 QQGHEGR

Sequence ? help Back to Top

Protein Sequence Length: 1267 aa Download sequence Send to blast

MEMTGKMPAR VKRIRFANSQ NECEVVLPQT LASGGESSSR AVGEATXSKP KRRRRATSAG  60
EGPSGDEPSE TKGPNLTRCS AALVVQACRA LSTVHHEKLE EIGLDAVAYK SLESLEQPDL  120
IQWLMDRTDP DTMCISIDDD RKIPITSRTV RLVLGTLLGG NDIVLPSHKV VRTVHKSITD  180
ELGIHKKARL STKQLIEVIK SQKDDSRAIX YFIMVLMSKL LVPTTDFYVP KGDVWVASDL  240
DRVTAIDWSK AVFRAVNDSI RYWRQNPASS IASFVVFLVV LYLDNILPPR DIGLDLTFTP  300
RIQIFTKDIV DKLVAADQEA SGDGTPPFGN LPLQALESTC YANKPAGRAK GPMVEDIMAP  360
AYNFPNMSTI LGPHLAGLPS DQRLVLLESL AEYDRQAKES ALEIERQFRL VVDKQHMLCQ  420
SVIDVLQANR AAQPPPVVPQ AAQCQEASRR QSDVQFTSAE INPNDSEDQQ QQQHHGCNGS  480
PSVFDQHTIH PNAPTHVSPS MEIVPYIPPV RLEVADQPHL GSAHSPDLTQ RSPIPTDSAP  540
LTSEEVSAQY SAPDTAEEPL AIEVGGVIGN VPGVSTAIQT EDAPRAVDQE SHGTELLAET  600
NEDTDDANST PWSQPKRFIQ KPARFVSPVV VGPSIMPSDV SLSVQLRDFL LTNGGCMDMS  660
VFITTLIMYL CVKLLDIDSS VAYGNDELKS FSNGNLTEWL FIDAFSSILF KDDMRNMPDT  720
FGKRIFFPTS VSIIVPVLHH NHWSLYAINI AHGRVDIMDS NNYNLIGTLE SDHHCALSKR  780
IVKRLSNALH EVAPKSFCRF GGFRKNMMKC PKVQICSNDC VFYIMRFMEA YDGNRESIET  840
FSIPGPSVPP HMVPTEGMAF PTYDDAYNFY QRYACHAGFD IKKSRMHKAF REVCCTREGK  900
HVSKVNNGDR QWRRPSKKMG CKAYVKLRHN YDGGALSSVV YDVVELQHNH PLTPSPSAVK  960
HMRAHKNRDD TFMQFMDTMQ ESHVPQSCIM GVLFDLHGGQ ENIPFTSHDV ENRWHILNRH  1020
SDPLNTIFAR DAQIEPDMML CINQTYTPYE FETSWDQFIK RYDLEGCPTM KALYDIRDKW  1080
VPAFSRKEYC ERMTSTQRSE SMNKLVKHKF VDHQTTLHRF ARRILEVITD RKEKEAAETR  1140
AWSGKPVLAV RWPFVIQMSR LYTRAAFRLF EDALXDSTDF RITQDDNFRN GWLVSHTKLS  1200
EKHNWCXKQF KLIADVDAGV FTCECKQWEH TGMFCTHMLW AFVHVQLEKI PAAYILKSKF  1260
QQGHEGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA03G0393200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC136501	0.0	AC136501.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0044M15, complete sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	I1PHT6	0.0	I1PHT6_ORYGL; Uncharacterized protein
STRING	ORGLA03G0393200.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1425	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-27	FAR1-related sequence 5