PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0352000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 265aa    MW: 27683.5 Da    PI: 6.1613
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0352000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.5e-1166112354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r+h e+E+rRR+ri+s +++Lr +l  +     +K +Ka+ L kAve +++L
  ORGLA03G0352000.1  66 RNHREAEKRRRERIKSHLDRLRAVLACD-----PKIDKASLLAKAVERVRDL 112
                        78************************98.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.7763112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-966112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1066115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-1166118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-769118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MFPVEVAAAA AGRMQGEAVV PMMLPPFFMD SGIWPAAAGV VDVAASAEEE AAAAAAAQDR  60
ALAASRNHRE AEKRRRERIK SHLDRLRAVL ACDPKIDKAS LLAKAVERVR DLKQRMAGIG  120
EAAPAHLFPT EHDEIVVLAS GGGGVGGAGG AAAVFEASVC CDDRSDLLPE LIETLRALRL  180
RTLRAEMATL GGRVRNVLVL ARDAGGAGEG GDGDDDRAGY SAVSNDGGDF LKEALRALVE  240
RPGAAAGDRP KRRRVVSDMN MQAAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250254KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0352000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629146.11e-104transcription factor bHLH106
SwissprotO806743e-47BH106_ARATH; Transcription factor bHLH106
TrEMBLI1PGM40.0I1PGM4_ORYGL; Uncharacterized protein
STRINGORGLA03G0352000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.13e-21bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]