PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA03G0331000.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 816aa MW: 93428.9 Da PI: 6.2779

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA03G0331000.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.6	5e-24	42	127	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y +YA +vGFsvrk +k+ +n+ +++r +vCskeg+r+++ ++ + +++r+etrtgC a++++k + +gk++vt+ + +HnH+l ORGLA03G0331000.1 42 CYVTYAGTVGFSVRKGWLEKTATNT-TKSRAYVCSKEGFRSKSVST--DPKKPRPETRTGCLAHMTIKITVSGKYVVTEYVADHNHDLE 127 7*****************96666.99**********9988..999**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-21	42	127	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-24	227	321	IPR018289	MULE transposase domain
Pfam	PF04434	1.6E-7	496	541	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.546	496	543	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-8	518	545	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 816 aa Download sequence Send to blast
GESKEDEIIE GEPDPEMEVV AGPGGEPKVG MVFLNEDKAY DCYVTYAGTV GFSVRKGWLE 60 KTATNTTKSR AYVCSKEGFR SKSVSTDPKK PRPETRTGCL AHMTIKITVS GKYVVTEYVA 120 DHNHDLETPL VDIQVLRSHK LLAKLQQPPD PPRVVLIPND YKNYVRTRHT KDMQLGDTQA 180 IYEYLQRKKG EHPSFFYAIQ VDEDDQLTNV FWADVKSILD YHYFGDVLCV DTRYSTSDHS 240 RPLLLFIGVN HHKQPVIFGA ALVYDESVES FKWLFETFKS AMSGKQPKTV MIDQSTAISE 300 AVASVWPRTT QRFSLIHLYK NATKILRDAF QVSETFADDF SRWLYGYEEE GDFLSSWEIL 360 SDKYNLKDNE WLGKLYADRE RWALPYGRDS FCADIAAALR SDNNTDAILA DLLKKEMDFP 420 SFFNNYDKLL ENKRLAEQQA DYLGVQMAQR VAPLRMLWQA ANAYTPTLFE MFRLEFELTL 480 TCMAYCCGEI GPISEYEVTV KNRPRDHFVR FDSSECMVVC SCKKFEFTGI PCCHVLKVLE 540 VRNIKELPPH YILKRWRKDA QSESPRENYG FEAVDEDPRF LLSKRYSMLY RTFYKIAAKA 600 AENIEAYTYM ESQFDQFIEQ VELLLQAKLH DKSSLNTILK VQQPNLFPNE ASNSETRRVS 660 TKKIKNVDAR RQQQSPLQSN KKKKGRQGLP EPEEAEVPLR VDPPTISNDI PNHLRTPTSQ 720 FLATSHIMQA PYIAQQFGLS SLQGFPGISP FGQLQEPAPA PLQQPHLQQP PFHSGPQIPQ 780 APPPDIQSLQ FLSSNPQLGH QATDQSQYTI PVWDFL

Sequence ? help Back to Top

Protein Sequence Length: 816 aa Download sequence Send to blast

GESKEDEIIE GEPDPEMEVV AGPGGEPKVG MVFLNEDKAY DCYVTYAGTV GFSVRKGWLE  60
KTATNTTKSR AYVCSKEGFR SKSVSTDPKK PRPETRTGCL AHMTIKITVS GKYVVTEYVA  120
DHNHDLETPL VDIQVLRSHK LLAKLQQPPD PPRVVLIPND YKNYVRTRHT KDMQLGDTQA  180
IYEYLQRKKG EHPSFFYAIQ VDEDDQLTNV FWADVKSILD YHYFGDVLCV DTRYSTSDHS  240
RPLLLFIGVN HHKQPVIFGA ALVYDESVES FKWLFETFKS AMSGKQPKTV MIDQSTAISE  300
AVASVWPRTT QRFSLIHLYK NATKILRDAF QVSETFADDF SRWLYGYEEE GDFLSSWEIL  360
SDKYNLKDNE WLGKLYADRE RWALPYGRDS FCADIAAALR SDNNTDAILA DLLKKEMDFP  420
SFFNNYDKLL ENKRLAEQQA DYLGVQMAQR VAPLRMLWQA ANAYTPTLFE MFRLEFELTL  480
TCMAYCCGEI GPISEYEVTV KNRPRDHFVR FDSSECMVVC SCKKFEFTGI PCCHVLKVLE  540
VRNIKELPPH YILKRWRKDA QSESPRENYG FEAVDEDPRF LLSKRYSMLY RTFYKIAAKA  600
AENIEAYTYM ESQFDQFIEQ VELLLQAKLH DKSSLNTILK VQQPNLFPNE ASNSETRRVS  660
TKKIKNVDAR RQQQSPLQSN KKKKGRQGLP EPEEAEVPLR VDPPTISNDI PNHLRTPTSQ  720
FLATSHIMQA PYIAQQFGLS SLQGFPGISP FGQLQEPAPA PLQQPHLQQP PFHSGPQIPQ  780
APPPDIQSLQ FLSSNPQLGH QATDQSQYTI PVWDFL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA03G0331000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120460	0.0	AK120460.1 Oryza sativa Japonica Group cDNA clone:J013106N05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630920.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X1
TrEMBL	Q8S7I2	0.0	Q8S7I2_ORYSJ; Putative transposase
STRING	ORGLA03G0331000.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-108	FAR1-related sequence 5