PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0322200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 310aa    MW: 34251.3 Da    PI: 7.8069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0322200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.3e-102262661055
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        rrRR+riN ++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  ORGLA03G0322200.1 226 RRRRERINGRLRILQKLVPNG-----TKVDISTMLEEAVHYVKFLQ 266
                        9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-13214274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.488216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-11220270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-11222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-7226266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.86E-7232270No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAVDWIWERR RREEEYNHQM SQDELQQPGQ VQWTPAPEEK SEIAVQFFTA PYPCQNGQLD  60
HGEHHALGGI GACSSVHWQP DRATCYWPPP LSGDGGGGSG SGSSGTGEGG YIGERCYYVG  120
EPDVPIGLNL LVGDNDGAGV VLRDAAPQAK RRTQAGHGGD LGRQKKKARV SDKRNQESMQ  180
SGSCSDNESN CSQVNRRKVD RVAGGGNGKV PARRRSATIA QSLYARRRRE RINGRLRILQ  240
KLVPNGTKVD ISTMLEEAVH YVKFLQLQIK VEVQIVCHDQ MLSSDELWMY APIVYNGMDL  300
GIDLNISPPR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1712ERRRRE
2212228RRRSATIAQSLYARRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0322200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631804.10.0transcription factor BHLH089-like isoform X1
RefseqXP_025879771.10.0transcription factor BHLH089-like isoform X1
TrEMBLI1PFS60.0I1PFS6_ORYGL; Uncharacterized protein
STRINGORGLA03G0322200.10.0(Oryza glaberrima)
STRINGORGLA10G0168100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144452123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-34bHLH family protein