PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0319700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 317aa    MW: 33253.4 Da    PI: 7.8069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0319700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.15e-06152198354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++ n+r r RR+r+ +++  L++l+ +      +K + a++L +A  YI+ L
  ORGLA03G0319700.1 152 TTTNKRPRVRRERLGERIIALQQLVSPF-----GKSDTASVLHEALGYIRFL 198
                        678************************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.754149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-12151213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-7154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.81E-5155203No hitNo description
SMARTSM003531.9E-5155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MVKEEEIITE AAGARGYMEM LGLGEEAADY LMCLSPSSYL SSPAASTTTA VASPTCASYL  60
APHPYHHLLS FSGQDQYHGD DVFGLQYYGG DQVIPAVVPQ KSSPTTECSS SVSSMSSSPT  120
ATAISSSKSP AFKKKGSRGC DQRKATAPAA ATTTNKRPRV RRERLGERII ALQQLVSPFG  180
KSDTASVLHE ALGYIRFLHD QVQCQVLSSP YLQRLPPSAR VPEQERGTPA AEEQPPALRP  240
SDLRSRGLCL VPISCTDHVA GAGTGHGNGA DLWSVAAGMA KATATVTAAV ERSKEAAAAA  300
AAPAALLRAD RPGQQLA
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0319700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728330.0AK072833.1 Oryza sativa Japonica Group cDNA clone:J023136C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628341.11e-177transcription factor bHLH113
RefseqXP_015628342.11e-177transcription factor bHLH113
TrEMBLI1PFQ10.0I1PFQ1_ORYGL; Uncharacterized protein
STRINGORGLA03G0319700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80822529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.12e-26bHLH family protein