PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0319300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 1013aa    MW: 110634 Da    PI: 8.4757
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0319300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.52.7e-28768824259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +DgynWrKYGqK+ k++e prsYY+Ct  gCpvkk vers+ d+ + eitY+g+H h+
  ORGLA03G0319300.1 768 KDGYNWRKYGQKQLKDAESPRSYYKCTRDGCPVKKIVERSS-DGCIKEITYKGRHSHP 824
                        8****************************************.***************7 PP
2WRKY101.84e-32913971159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg++ prsYY+Ct  gC+v+k++er++ dpk+v +tY+g+Hnh+
  ORGLA03G0319300.1 913 LDDGYRWRKYGQKVVKGNPRPRSYYKCTADGCNVRKQIERASADPKCVLTTYTGRHNHD 971
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.768762826IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-25763826IPR003657WRKY domain
SuperFamilySSF1182901.06E-22766826IPR003657WRKY domain
SMARTSM007749.8E-31767825IPR003657WRKY domain
PfamPF031061.4E-21768824IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.7E-34898973IPR003657WRKY domain
SuperFamilySSF1182901.57E-27905973IPR003657WRKY domain
PROSITE profilePS5081136.059908973IPR003657WRKY domain
SMARTSM007744.4E-36913972IPR003657WRKY domain
PfamPF031067.3E-24914971IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1013 aa     Download sequence    Send to blast
MAEALVAVLR LAASAAATAX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXVAGPPEV  60
DDDDAMTIDN LRRFFDVNVG KWNGAFYVRA RLPLVLLLLL LLWVCSLQDX DAECSCSCAC  120
VLVFFSSAIR CAREGAAGDQ HAAVSEHLRG GRPHQPPAIA VYQASFFSDI VCRXGGFXRV  180
GGVQNQRDKH VHCRXIPAGR ILSRGKGICS EVSDCWNAGD CPSGWCARRR XYWXRIPQKL  240
EDPFSXAIYC MXELPLLSXR QWPSKGFPHH GPKGSARYAY NFPXKAGIXS PTYVLFRXCR  300
YHQQXXNSST TGKMGRPFCD XEERGVWSNT FXSXYGGSPX KGPQWSANSG XHVNKIWIXH  360
NNNCSLDRIS KXQLASVXWR IXNDLVTWRN VHGISDRHRX DCEXHGFFSF GVLLDGITRK  420
EAAACADLXL SWFGCFINLL LXDXKALKSQ NLIIIFVAVS ATMAGHLIXA MPIVSPVKEK  480
AAIAFDAGEX PPSPPPRSIE QSHRRKETAS VGFGNIQLKQ LERVSPIPTH LARIPSLGRQ  540
PSLSSIGRRC HCTFQLVFVA XXKQRKLTRA AAAAMADRRR SDGGGGMQQQ PFTSPGQERV  600
FDGGGVPGQV AAPYGSDFDQ SSYMALLAAG AVGVGVGVQP TAAPWAVEED VAAAPPGISL  660
APQFSMANYA PPPSYQHPAT LVSPPLAAGL HPYSPYLHGV DAPPTQWPPR PAPPPSFSVL  720
DLAAAAAPHX XXXXXXXXXX XXXXXXXXXX XXXXXXXXAA AAIEQPAKDG YNWRKYGQKQ  780
LKDAESPRSY YKCTRDGCPV KKIVERSSDG CIKEITYKGR HSHPRPVEPR RGGAASSSSS  840
AMAAGTNHNA GAAADDAAAA DEDDPSDDDD TLLHEDDDDG EEGHDRGVDG EVGQRVVRKP  900
KIILQTRSEV DLLDDGYRWR KYGQKVVKGN PRPRSYYKCT ADGCNVRKQI ERASADPKCV  960
LTTYTGRHNH DPPGRPPAAA NLQMPGPAAM SLAGGGTAHQ QPSGGAHQMK EET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-32769973877Probable WRKY transcription factor 4
2lex_A2e-32769973877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0319300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418520.0AY341852.1 Oryza sativa (japonica cultivar-group) WRKY11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1PFP70.0I1PFP7_ORYGL; Uncharacterized protein
STRINGORGLA03G0319300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.14e-35WRKY DNA-binding protein 4