PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA03G0298100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 456aa MW: 49349.8 Da PI: 7.7296 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.1 | 1.7e-24 | 76 | 120 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e ORGLA03G0298100.1 76 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 120 79****************************************986 PP | |||||||
2 | QLQ | 57.8 | 3.2e-20 | 10 | 46 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyLaan PvP+ Ll +i++ ORGLA03G0298100.1 10 GPFTPSQWIELEHQALIYKYLAANSPVPHSLLIPIRR 46 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.2E-11 | 10 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 7.3E-15 | 11 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.087 | 11 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.455 | 76 | 120 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.5E-20 | 77 | 119 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MQGAMARVRG PFTPSQWIEL EHQALIYKYL AANSPVPHSL LIPIRRSLTS PYSPAYFGSS 60 TLGWGSFQLG YSGSADPEPG RCRRTDGKKW RCSRDAVADQ KYCERHMNRG RHRSRKHVEG 120 QSGHAAKAMP AAVAAAAASA TQPSAPAAHS GGAVAGLAVN HQHQRMKNYA ANTANPCSLQ 180 YSRDLANKHN ESEQVQDSDS LSMLTSISTR NTGSLFPFSK QHNPFEVSNS RPDFGLVSPD 240 SLMSSPHSSL ENVNLLTSQS LNEQQSAVSL QHFVDWPRTP AQGALAWPDA EDMQAQRSQL 300 SISAPMASSD LSSASTSPIH EKLMLSPLKL SREYSPIGLG FAANRDEVNQ GEANWMPMFR 360 DSLMGGPLGE VLTKNNNMEA RNCLSESLNL LNDGWDSSSG FDSSPVGVLQ KTTFGSVSSS 420 TGSSPRLENH SVYDGNSNLR DDLGSVVVNH PSIRLV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA03G0298100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073578 | 0.0 | AK073578.1 Oryza sativa Japonica Group cDNA clone:J033048N01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628630.1 | 0.0 | growth-regulating factor 6 | ||||
Swissprot | Q6AWY3 | 0.0 | GRF6_ORYSJ; Growth-regulating factor 6 | ||||
TrEMBL | A0A0D3FNL5 | 0.0 | A0A0D3FNL5_9ORYZ; Uncharacterized protein | ||||
STRING | OBART03G32870.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4290 | 35 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 2e-55 | growth-regulating factor 1 |
Publications ? help Back to Top | |||
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