PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0297500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 327aa    MW: 36281.6 Da    PI: 5.6272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0297500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.4e-10156204355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  ORGLA03G0297500.1 156 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 204
                        58**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.05E-16151220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.87E-11151208No hitNo description
Gene3DG3DSA:4.10.280.101.8E-16153221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.447153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-8156204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MYSGQQSDQC PGPNSGKEFL EVNWDSVALH QKMGYNSGAF GFQAYPMVLE DREGLYRSPN  60
GTFCQNIQLS DDHSSGAKRR KGIDDHIALL NPSASSRIQN VGDQQTEVSS QQERISMEED  120
NQRSCSKMQS KEDSSDGDGT KEDYVHVRAK RGQATNSHSL AERLRRKKIS ERMKLLQDLV  180
PGCSKITGKA VMLDEIINYV QSLQRQVEFL SMKLATVNPE LSFDIEQILS KQMMLSQDRH  240
LAFYGVDPGS SALVAHFNQG IMQPEMLCNV SNPADVLQGT TIQDISTVNQ IPAMWEGLQN  300
IPHLNYNPGG AMAEGSTNNS GSMKIEK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0297500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632666.10.0transcription factor bHLH74
RefseqXP_015632667.10.0transcription factor bHLH74
RefseqXP_025879964.10.0transcription factor bHLH74
RefseqXP_025879965.10.0transcription factor bHLH74
SwissprotQ6NKN93e-52BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A0D3FNK70.0A0A0D3FNK7_9ORYZ; Uncharacterized protein
TrEMBLI1PF290.0I1PF29_ORYGL; Uncharacterized protein
STRINGORGLA03G0297500.10.0(Oryza glaberrima)
STRINGOBART03G32830.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60333650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]