PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0295100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 261aa    MW: 28294.5 Da    PI: 9.1732
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0295100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.8e-1363110355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        + h  +Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k+Lq
  ORGLA03G0295100.1  63 QEHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 110
                        67999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.02560109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-1862128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-1063110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1763121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.18E-1265114No hitNo description
SMARTSM003536.1E-1566115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
QAQSAPYYGG ASAAALKPKQ ELDAAAAAFS QARPVKRSYD AMVAADVAKA PAAAASRPAS  60
QNQEHILAER KRREKLSQRF IALSKIVPGL KKMDKASVLG DAIKYVKQLQ DQVKGLEEEA  120
RRRPVEAAVL VKKSQLSADD DDGSSCDENF DGGEATAGLP EIEARVSERT VLVKIHCENR  180
KGALITALSE VETIGLTIMN TNVLPFTSSS LDITIMATAG ENFSLSVKDI VKKLNQAFKL  240
SLLERNLRLM VLIRSFPCFC F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-1465119963Transcription factor MYC2
5gnj_B7e-1465119963Transcription factor MYC2
5gnj_E7e-1465119963Transcription factor MYC2
5gnj_F7e-1465119963Transcription factor MYC2
5gnj_G7e-1465119963Transcription factor MYC2
5gnj_I7e-1465119963Transcription factor MYC2
5gnj_M7e-1465119963Transcription factor MYC2
5gnj_N7e-1465119963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16873ERKRRE
26974RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0295100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1205390.0AK120539.1 Oryza sativa Japonica Group cDNA clone:J013129F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627848.11e-173transcription factor bHLH18
RefseqXP_015627849.11e-173transcription factor bHLH18
SwissprotQ9T0729e-54BH025_ARATH; Transcription factor bHLH25
TrEMBLI1PF050.0I1PF05_ORYGL; Uncharacterized protein
STRINGORGLA03G0295100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.23e-47bHLH family protein