 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
ORGLA03G0280400.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
NF-YA |
| Protein Properties |
Length: 258aa MW: 27996.1 Da PI: 9.3938 |
| Description |
NF-YA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA03G0280400.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | CBFB_NFYA | 105.7 | 4e-33 | 162 | 218 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
+ep+YVNaKQy++Il+RRq+Rak+e ekk+ ksrkpylheSRh+hA+rR+Rg+gGrF
ORGLA03G0280400.1 162 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKSRKPYLHESRHQHAMRRARGTGGRF 218
69****************************.**************************9 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010262 | Biological Process | somatic embryogenesis |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0055046 | Biological Process | microgametogenesis |
| GO:0016602 | Cellular Component | CCAAT-binding factor complex |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 258 aa
Download sequence Send
to blast |
MESRPGGTNL VETRGQGALP SGIPIQQPWW TTSAGVGAVS PAVVAPGSGA GISLSGRDGG 60
GDDAAEESSD DSRRSGETKD GSTGQEKHHA TSQMTALASD YLTPFSQLEL NQPIASAAYQ 120
YPDSYYMGMV GPYGPQAMSA QTHFQLPGLT HSRMPLPLEI SEEPVYVNAK QYHGILRRRQ 180
SRAKAELEKK VVKSRKPYLH ESRHQHAMRR ARGTGGRFLN TKKNEDGAPS EKAEPNKGEQ 240
NSGYRRIPPD LQLLQKET
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB288030 | 0.0 | AB288030.1 Oryza sativa Japonica Group OsHAP2D mRNA for HAP2 subunit of HAP complex, complete cds. |
| GenBank | AK069854 | 0.0 | AK069854.1 Oryza sativa Japonica Group cDNA clone:J023036P10, full insert sequence. |
| GenBank | EU847012 | 0.0 | EU847012.1 Oryza sativa Japonica Group clone KCS256D08 CCAAT-binding transcription factor mRNA, complete cds. |
