PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0269200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 385aa    MW: 39756.2 Da    PI: 7.3441
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0269200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.22e-15192238455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  Av+Y+k+Lq
  ORGLA03G0269200.1 192 EHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDAVRYVKELQ 238
                        699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.406188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-13191238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-18192254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-19192248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.72E-16193242No hitNo description
SMARTSM003532.6E-16194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEDSSLFMEW AMETLQHLHP LPATPPPAGG GYAGDNATFP SLQALRESSV SQNGMAPPEP  60
TAHEGHRASY SWSSGDTDSV SGGGGGAVME HDGWSTSPNS VRCAAGGGGG GGGGGLWPVS  120
WNFSSAMTQP CNDQATPPNP PTTTRARYGG GGVRYLPAAV SPSPSAQTRR ASSKGNGGGG  180
SGSSSAAPYA QEHIIAERKR REKINQRFIE LSTVIPGLKK MDKATILSDA VRYVKELQEK  240
LSELEQHQNG GVESAVLLKK PCIATSSSDG GCPAASSAVA GSSSSGTARS SLPEIEAKIS  300
HGNVMVRIHG ENNGKGSLVR LLAAVEGLHL GITHTNVMPF SACTAIITIM AKVEDGVSVT  360
AEDIVGKLNT VLQQNSRNSA RETKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196201ERKRRE
2197202RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0269200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071900.0AK107190.1 Oryza sativa Japonica Group cDNA clone:002-125-A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629952.10.0transcription factor NAI1
TrEMBLI1PE960.0I1PE96_ORYGL; Uncharacterized protein
STRINGORGLA03G0269200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-29bHLH family protein