PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0268800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 277aa    MW: 29671.8 Da    PI: 5.0229
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0268800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.81.5e-16128173555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h  +Er+RR++iN++f eL  ++Pk+     kK++Ka+iL  Av YI++Lq
  ORGLA03G0268800.1 128 HVVAERKRREKINQRFMELSAVIPKL-----KKMDKATILSDAVSYIRELQ 173
                        8899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.482123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-18126189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-19127184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.67E-17128177No hitNo description
PfamPF000104.8E-14128173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-17129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDDSSLFLQW AVSTLQHQHP AAVAVVADDD ATFFSFQELC DAEEVVVVPV QEEVITEAHG  60
GGASSCRSTG NVGGGGGIGL AVAVDEHGGW SRSPNPGARP PSGGCGSNNL PLMSWDFSAA  120
SVAVQLEHVV AERKRREKIN QRFMELSAVI PKLKKMDKAT ILSDAVSYIR ELQEKLKALE  180
EQAAARVTEA AMATPSPARA MNHLPVPPEI EVRCSPTNNV VMVRIHCENG EGVIVRILAE  240
VEEIHLRIIN ANVMPFLDQG ATMIITIAAK ASSSLLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14126182763Transcription factor MYC2
5gnj_B3e-14126182763Transcription factor MYC2
5gnj_E3e-14126182763Transcription factor MYC2
5gnj_F3e-14126182763Transcription factor MYC2
5gnj_G3e-14126182763Transcription factor MYC2
5gnj_I3e-14126182763Transcription factor MYC2
5gnj_M3e-14126182763Transcription factor MYC2
5gnj_N3e-14126182763Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136ERKRRE
2132137RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0268800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1163690.0AC116369.5 Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete sequence.
GenBankAC1467180.0AC146718.2 Oryza sativa chromosome 3 B1130H05 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880235.11e-148LOW QUALITY PROTEIN: transcription factor NAI1
TrEMBLI1PE920.0I1PE92_ORYGL; Uncharacterized protein
STRINGORGLA03G0268800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.21e-25bHLH family protein