PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0251700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 757aa    MW: 83603.4 Da    PI: 8.2781
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0251700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.47.9e-15460499241
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                        ++k+C+CkkskClk+YCeCfa++++Cse+C+C +C+N+++
  ORGLA03G0251700.1 460 SCKRCSCKKSKCLKLYCECFASKVYCSESCSCRGCFNDHS 499
                        689**********************************987 PP
2TCR45.51.5e-14546583239
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                        +k+gCnCk+s C+kkYCeCf++g+ Cs +C+Ce+CkN+
  ORGLA03G0251700.1 546 HKRGCNCKRSYCVKKYCECFQSGVGCSMSCRCENCKNS 583
                        789**********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.8E-16459500IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.035460585IPR005172CRC domain
PfamPF036381.2E-10462497IPR005172CRC domain
SMARTSM011143.0E-13545586IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.0E-11547583IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
LRSETNKEGT RGGGRFEVVA TTCEVTVVVG CMKEMLAGQF YCKGEERVDG GASVKRRGAP  60
QRKGKSPKKV EGKTYKYKGF VIEGCELDST IIMIKSSDLL HIPSIFTSPE VNSQKGSKTS  120
ICIDRSLSQA YHDSPDNASI LPTNLARRIQ LSSDTLGSDK RHGIAGKTDH ETAQKHAKLS  180
CFDQRCLDKM KQLTSGMNVQ KRDLAKTHND EITACDWDYL GTQYDSSVVP ESDLRFETAE  240
LLLETPKNGD AMPGKSFLPI VEANLENSRR KLFQGSADCY SQSAVDNIHA YCTSRGKEVA  300
TNHVSGILPC PRESQLIPDH HFSDSLEVPS DYMAMNPSAV SQHLRGLHRR SLFNDKVRDP  360
TMGVQSVSNL GASTCATRHR SIPDDNYSKL VGSPVCALPN VDLHLVRMTE EMLAPNTSEM  420
NTHNQDNYSS QATMPTSAGN SGQENPKRKR QKCQNGNVDS CKRCSCKKSK CLKLYCECFA  480
SKVYCSESCS CRGCFNDHSH EETVLSTRNR IESRSPLAFA PKVIRTCGPG LEFGEDSNAT  540
PASSCHKRGC NCKRSYCVKK YCECFQSGVG CSMSCRCENC KNSFGARKGI ERFETKEIER  600
ADRKMKDHPK EEQSEMDKYH ALCEIWGVRS TENLFTTPSM DSRRAFALFP SECPKSSLTS  660
STRTSSHLHS PTRTDVLLSP FGSYTQMLLG NEASDMLLQQ GDSSCTASLR IASPNKKRVS  720
PLRTGNTLSP TCRKELGLKS IIPPFPSLTG DANSELQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1246258212120Protein lin-54 homolog
5fd3_B1e-1246258212120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0251700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2427500.0AK242750.1 Oryza sativa Japonica Group cDNA, clone: J090050H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879709.10.0protein tesmin/TSO1-like CXC 2
TrEMBLI1PDS10.0I1PDS1_ORYGL; Uncharacterized protein
STRINGORGLA03G0251700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147741921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.15e-44TESMIN/TSO1-like CXC 2