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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA03G0222700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 137aa MW: 15293.9 Da PI: 8.2546 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 56.2 | 7.3e-18 | 38 | 134 | 1 | 94 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsP 89 lv+ L+ cA+ vs+g++e+a +Larl e+as +g p++ +aayf e L r++r++++++++ pp+e +++ ++ ++al++++ ++P ORGLA03G0222700.1 38 LVRMLTVCADSVSAGNHEAAIYYLARLCEMASLAGpMPIHHVAAYFIEVLTLRVMRMWPHMFNISPPRELTNDAfsGDDDTMALRILNTITP 129 5789*******************************99*********************************988798999************* PP GRAS 90 ilkfs 94 il ++ ORGLA03G0222700.1 130 ILLLG 134 *9776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 11.526 | 12 | 137 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.5E-15 | 38 | 134 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MGAGRRRRQK MMPPLLSKFD ARNGVPTPGQ AEQETMELVR MLTVCADSVS AGNHEAAIYY 60 LARLCEMASL AGPMPIHHVA AYFIEVLTLR VMRMWPHMFN ISPPRELTND AFSGDDDTMA 120 LRILNTITPI LLLGKHS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA03G0222700.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146468 | 0.0 | AC146468.1 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBa0008D12 map MAP_LOC, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881992.1 | 2e-48 | protein DWARF AND LOW-TILLERING-like | ||||
Swissprot | Q9LWU9 | 2e-49 | DLT_ORYSJ; Protein DWARF AND LOW-TILLERING | ||||
TrEMBL | I1PCY1 | 1e-97 | I1PCY1_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0222700.1 | 2e-98 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP24047 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 5e-23 | GRAS family protein |
Publications ? help Back to Top | |||
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